RetrogeneDB ID:

retro_ttru_799

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3486:986..1575(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPIA
Ensembl ID:ENSTTRG00000000876
Aliases:None
Description:ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:10297]


Retrocopy-Parental alignment summary:






>retro_ttru_799
ACAAGTACTGGTGGCGGGGACGCTAACAGCATCTGCCTGGCCCCCTCCGTCATGTCCAAGGCTGAGGAGGCCAAGAAGCT
GGCAGGCCGTGCAGCGGTGGAGAACCACGTGAGGAATAACCAAGTGCTGGGAATTGGGAATGGTTCTACAGTTGTCCACG
CCGTGCAGCAAATAGCTGAAAGGGTGAAACAAGAGAATCTGAACCCCGTCTGTATTCCCACTTCCTTCCAGGCCCGTCAG
CTCATCCTGCAGTTTGGCTGAACTCTTGGTGACCTGGACCGACACCCAGAGACTGACCTCACCATCGATGGTGCCGATGA
GGTAGATGTTGATCTCAATCTCATCAAGGGCAGTAGAGGATGCCTGACTCAGGAGAAAATTGTGGCTGGCAATGCCAGTT
GCTTCATCGCGATCACCGATTTCAGGAAAGGTTCAAAGAACCTCAGGGAATCAGTGGCACAAGGGGAACCCCCAACAAGG
TCATCCCGATGGCCTATTCCCAGTGAGCCGAGCTGTGACCCAGAAGTTTGGGGGCGTGATTGAACTTCGAATGGCCATCA
ACAAGGCAGATCCCTTGGTGATGGGTAAC

ORF - retro_ttru_799 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.42 %
Parental protein coverage: 63.64 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalTSTAGGDANSVCPAPSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLV
TST.GGDANS.C.APS.MSKAEEAKKLAGRAAVENHVRNNQVLGIG.GST.VHAVQ.IAERVKQENLN.V
RetrocopyTSTGGGDANSICLAPSVMSKAEEAKKLAGRAAVENHVRNNQVLGIGNGSTVVHAVQQIAERVKQENLNPV
ParentalCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGNASRFIVIAD
CIPTSFQARQLILQ.G.TL.DLDRHPE.DL.IDGADEVD.DLNLIKG..GCLTQEKIVAGNAS.FI.I.D
RetrocopyCIPTSFQARQLILQFG*TLGDLDRHPETDLTIDGADEVDVDLNLIKGSRGCLTQEKIVAGNASCFIAITD
ParentalFRKDSKNL-GDQWHK-GIPIEVIPMAY-VPVSRAVTQKFGGVIELRMAVNKAGPVVTDN
FRK.SKNL.G.QWHK.G.P..VIPMAY..PVSRAVTQKFGGVIELRMA.NKA.P.V..N
RetrocopyFRKGSKNL>GNQWHK>GTPNKVIPMAY<FPVSRAVTQKFGGVIELRMAINKADPLVMGN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_799 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_799 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000028661 retrocopy
Equus caballus ENSECAG000000117541 retrocopy
Macropus eugenii ENSMEUG000000082561 retrocopy
Microcebus murinus ENSMICG000000064621 retrocopy
Myotis lucifugus ENSMLUG000000053841 retrocopy
Monodelphis domestica ENSMODG000000096491 retrocopy
Oryctolagus cuniculus ENSOCUG000000068403 retrocopies
Otolemur garnettii ENSOGAG000000341782 retrocopies
Tarsius syrichta ENSTSYG000000064068 retrocopies
Tursiops truncatus ENSTTRG00000000876 2 retrocopies
retro_ttru_1175, retro_ttru_799 ,



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