RetrogeneDB ID: retro_ttru_851

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_368:110728..112227(+)
• Located in intron of: ENSTTRG00000010071

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TGS1
• Ensembl ID: ENSTTRG00000017239
• Aliases: None
• Description: trimethylguanosine synthase 1 [Source:HGNC Symbol;Acc:17843]

Sequence

>retro_ttru_851
ATGGACAGCAGAAGAGAATGCCTTGCTTAGGGCCAAAGTGAACCATGTAATGGAGGAAGCAAGGAAAGCAGCTTGTCTGG
GAACAGAAGCACAAGCCAACCAGCTCAGGATTCACAAGAGTCATCAGAAGCAAACACAATCACAGACAGACCACACCTCA
TCGGCACTGATGGAGATGAGAGTGGCAAAGATCCACCTGAACAGAAGCCAAGCAAATTCAAGAGGAGCCACGAACTGGAC
ATTGATGAAAACCCAGATTCAGACTTTGATGTCGACGGTTCCCTTCTAGGATTCAAGCATGGCTCAGGACAAAAATATGG
TGGAATTTCAAATTTCAGTCACCGGCGGGTCAAGTATCCACACAAGAATGTGAAGTACAAGTCAAAGTACTTGGACATGA
GAAGACAAATCAATATGAAAAACAAACACATCTTCTTCACTGAAGAGCCAGGAAAAACTCTTTTCAAGAAAAGCAAAACT
TTGAATAAGGTAGAAAAATTCCTAAAATGGGTAATGAACCAATGCATGAGGAAGCATCGCAGGAGTCAGTTTCTCATAAC
AACGTTCAAGATACTTGCACAAGCAGTGGTTCAGAGGAACAAGAAGTGTCTGTTGAAAAAGGGGATGACCCACCGGAGAC
GAGTGAGCCAGAACCTGGAAAGCGTCGTGCCATGTCTTCAGCTGGGGAAGTGGGAACAGAGAAAACTGACAGGGACAGCA
CAGAAGCAGCAGTGACAGATGAGGGTGACTGCCCCACCAAGGCTGCACCAGACCGTCTTCAGGTAGAAGCCGAAGCTGAA
AATAAAAAGAAGAAGAAGAAGAGCAAGAACAGAAAGGGAATTGGTCTGCCTCCGGAGATCACTGCTGTGCCCGAGCTGGC
AAAGTACTGGGCCCAGAGATACAGGCTCTTCTCCCGCTTTGACGATGGGATTAAATTAGACAGAGAGGGCTGGTTTTCAG
TTACACCCGAGATCGCTGAGCACATTGCTGGCAGGGTCAGCCCGTCCTTCCACTGTGACACCGTAGTCAACGCATTTTGT
GGAGTTGGAGGAAATACCATTCAGTTTGCCTTAACAGGAAAGAGAGTGATCACCATTGATATTGCTCCTGTTAAGATCGA
TCTTGCTCACAGTAATGCAGAAATTTATGGGGTAGCGGACAAGATTGAGTTCATCTGTGGAGATTTCCTGCAGCTGGCTT
CTCGTTTAAAGGCTGATGTCGTGTTTCTCAGCCCTCCTTGGGGAGGACCACACTACACCACCGCCGAGACCTTCGACATC
AGCACCATGATGTCTCCTGATGGCTTAGAAACTTTTCAGACTTTCCCAGAAGATCACTAATAATATCATTTATTTTCTTC
CAAGAAATGCTAATATTGACCAGGTGGCGTCCTTGGCTGGGCCTGAGGGCAAGTGGAAATAGAACAAAACTTTAATAATA
GATTGAAGGCAATCACTGCTTATTTGGGGGAACTGATCCGCAGATCAGCCTCTGAATCA

Alignment

ORF - retro_ttru_851 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.6 %
• Parental protein coverage: 59.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  VNSRRECPASGQSEPCNGGTKESGLSGNRSTSQPAQDSQESSGANTVKDSPRLIGTDGDESGEDPPEQKP
          ..SRREC.A.GQSEPCNGG.KES.LSGNRSTSQPAQDSQESS.ANT..D.P.LIGTDGDESG.DPPEQKP
Retrocopy MDSRRECLA*GQSEPCNGGSKESSLSGNRSTSQPAQDSQESSEANTITDRPHLIGTDGDESGKDPPEQKP

Parental  SSLKRSHELDIDENPDSDFDVDGSLLGFKHGSGQKYGGISNVSHRRVRYLHKNVKYKAKYLDMRRQIDMK
          S..KRSHELDIDENPDSDFDVDGSLLGFKHGSGQKYGGISN.SHRRV.Y.HKNVKYK.KYLDMRRQI.MK
Retrocopy SKFKRSHELDIDENPDSDFDVDGSLLGFKHGSGQKYGGISNFSHRRVKYPHKNVKYKSKYLDMRRQINMK

Parental  HKHIFFTEEPGKTLLKKSKTLSKVEKFLKWV-NEPMDDEASQEAVSHNNVQDTCTSSGSEEQEVSVGKGD
          .KHIFFTEEPGKTL.KKSKTL.KVEKFLKWV.NEPM..EASQE.VSHNNVQDTCTSSGSEEQEVSV.KGD
Retrocopy NKHIFFTEEPGKTLFKKSKTLNKVEKFLKWV<NEPMHEEASQESVSHNNVQDTCTSSGSEEQEVSVEKGD

Parental  DPPETSEPEPGKRRAMSPAGEVGTEKTDRDSTAAAVPDEGDCPAQAAPDRLQEEAEAENKKKKKKKKSKN
          DPPETSEPEPGKRRAMS.AGEVGTEKTDRDST.AAV.DEGDCP..AAPDRL....EA.............
Retrocopy DPPETSEPEPGKRRAMSSAGEVGTEKTDRDSTEAAVTDEGDCPTKAAPDRL--QVEAXXXXXXXXXXXXX

Parental  RKGIGLPPEITAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFQCDTVVDAF
          ..GIGLPPEITAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPE.IAEHIAGRVS.SF.CDTVV.AF
Retrocopy XXGIGLPPEITAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPE-IAEHIAGRVSPSFHCDTVVNAF

Parental  CGVGGNTIQFALTGKRVIAVDIDPVKIDLARHNAEIYGVADKIEFICGDFLQLASHLKADVVFLSPPWGG
          CGVGGNTIQFALTGKRVI..DI.PVKIDLA..NAEIYGVADKIEFICGDFLQLAS.LKADVVFLSPPWGG
Retrocopy CGVGGNTIQFALTGKRVITIDIAPVKIDLAHSNAEIYGVADKIEFICGDFLQLASRLKADVVFLSPPWGG

Parental  PDYATAEIFDISTMMSPDGFE-IFRLSQKITNNIIYFLPRNANIDQVASLAGPG-GQVEIEQNFLNNRLK
          P.Y.TAE.FDISTMMSPDG.E..FRLSQKITNNIIYFLPRNANIDQVASLAGP..GQVEIEQNF.NNRLK
Retrocopy PHYTTAETFDISTMMSPDGLE>LFRLSQKITNNIIYFLPRNANIDQVASLAGPE<GQVEIEQNF-NNRLK

Parental  TITAYFGKLIRRSASES
          .ITAY.G.LIRRSASES
Retrocopy AITAYLGELIRRSASES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_851 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_851 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000017239	1 retrocopy	retro_ttru_851 ,