RetrogeneDB ID:

retro_ttru_888

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_510:106969..107458(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VHLL
Ensembl ID:ENSTTRG00000007560
Aliases:None
Description:von Hippel-Lindau tumor suppressor-like [Source:HGNC Symbol;Acc:30666]


Retrocopy-Parental alignment summary:






>retro_ttru_888
CGGCAGGAGATGGAGGCAGGGCGGCCGCGGCCGATGGTGCGCTCAGTGAACACGCGCGAGCCGTCCCAGGTCATCTTCTA
CAACCGCAGCCCGCGCGTGGTGCTGCCCGTGTGGCTCAACTTCGACGGCGAGGTGCAGCCCTACCTGACGCTGCCCCCCA
GCACGGGCCGCCGAATCCATAGCTACCGGGGTCATCTTTGGGTCTTCCTAGATGCTGGGACATCTGATGGGCTTCTAGTT
AACCAAACCGAGCTGTTTGTGCCGTCTCGCAATGTTGATGGACAGCCTATTTTTGCAAACATCACACTACCAGTGTACAC
CCTGAAACAGTGGTGCCTCCAGGTTGTGCGAAGCCTAGGCAAGCCTGAGGATTACAGGAGACTGGACATCGCGAGATCCC
TCTAGGAAGATCTGGAGGACCACCCAAATGTGTGGAAGGACCTGGAGCGGTTGCCCCAGGAGCATATTGAAAATCAGTGG
ATGGCAGAG

ORF - retro_ttru_888 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.57 %
Parental protein coverage: 79.13 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQQEMEAGRPRPMLRSVNTREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
.QEMEAGRPRPM.RSVNTREPSQVIF.NRSPRVVLPVWLNFDGE.QPY.TLPP.TGRRIHSYRGHLW.F.
RetrocopyRQEMEAGRPRPMVRSVNTREPSQVIFYNRSPRVVLPVWLNFDGEVQPYLTLPPSTGRRIHSYRGHLWVFL
ParentalDAGTSDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPEDYRRLDIARSLYEDLED
DAGTSDGLLVNQTELFVPS.NVDGQPIFANITLPVYTLK..CLQVVRSL.KPEDYRRLDIARSL.EDLED
RetrocopyDAGTSDGLLVNQTELFVPSRNVDGQPIFANITLPVYTLKQWCLQVVRSLGKPEDYRRLDIARSL*EDLED
ParentalHPNVWKDLERLTQEHIENQRMGD
HPNVWKDLERL.QEHIENQ.M..
RetrocopyHPNVWKDLERLPQEHIENQWMAE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_888 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_888 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Mus musculus ENSMUSG000000339331 retrocopy
Tursiops truncatus ENSTTRG00000007560 1 retrocopy
retro_ttru_888 ,



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