RetrogeneDB ID: | retro_ttru_991 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_908:359669..360437(-) | ||
| Located in intron of: | ENSTTRG00000009001 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TTC23L | ||
| Ensembl ID: | ENSTTRG00000003264 | ||
| Aliases: | None | ||
| Description: | tetratricopeptide repeat domain 23-like [Source:HGNC Symbol;Acc:26355] |
Retrocopy-Parental alignment summary:
>retro_ttru_991
CTCCCACCTGTCAGCAATGACACCGACTGGGACTTCTGCTCCACCCATCACAGCACACCAAGGCCCCAGCACACCAGCGA
ACAGATGAGACTGTATCCCACTGGTGGGTCTGGAGAGAGTGAAGAGGGCACAGATGCCAAGAAGGAGAAGGCCACAGACT
GTGTCTCTTCCTGAAAAGAGAACAGCCCAGTGCCTGAAGAAAACAGCTCAACTGATTAAGGAAAAACAACGAACTCCTAA
GCAAACAAGGAGCTAATTCTGTGTGTCATCCTGTCTCGGGTTATTCTGGGGAAGAGCACTGGAAACGTGCACAGGCTTTG
GCCAACCTGGCTATGGCTGCCTGACACGGAGAGACCCCCCAGCTCAGGCCAGGAAACATGCTGTGTCCACCAAGGACGCG
CTGCTGAGCTACAAGGGAGACATGGCCGCAGACAAGGAGAGCGAGGAAATCCTGGAAGCTCTGGTCGTGCCCCGCCACAC
TCTGGGGGTGGCCTGGCTCCTGCCAAACCAAGACACAGAGGCCTGCTTCGACCTGAAGAGGCAGAGGGAACACGAAGGAG
CGAAAGAACTACATGAGGGAGGCGTCTGGGGATTACCAGTCTCAGAGAAGGACCAAGTGTTGCTTGGGGCAGGGCCTCCT
TGGCCATCTGCAGGTTGAACACAGCTCGGGCATACTTGGAACAGGCACTTGGCAACATTATTACTGCTGAGGGTGACAGG
ATGTCAGAAGTGATCGGTCTACAGAGGAACCACGCCCAGGCCCGCCAG
ORF - retro_ttru_991 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.63 % |
| Parental protein coverage: | 71.99 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 7 |
Retrocopy - Parental Gene Alignment:
| Parental | IPTVSNDTDWDFC-FHLSQQTKIPEHQQRDE-LYPTSGSGESEQD-AKAKEEKAVDRMSLPREKPAQSQK |
| .P.VSNDTDWDFC..H.SQ.TK.P.HQ..DE.LYP..G........A...........SLP....AQ..K | |
| Retrocopy | LPPVSNDTDWDFC<LHPSQHTKAPAHQRTDE>LYP-TGGSGESEE>AQMPRRRRPQTVSLPEKRTAQCLK |
| Parental | KVAQLSK-GKM-NTQANEELIRCVILSRIIFG-EEPWKCAQALATLA-YGYVTLRGLPAQAKKHAESAKN |
| K.AQL.K.GK..N..AN.ELI.CVILSR.I.G.EE.WK.AQALA.LA.YG..T.R..PAQA.KHA.S.K. | |
| Retrocopy | KTAQLIK<GKTTNS*ANKELILCVILSRVILG<EEHWKRAQALANLA<YGCLTRRDPPAQARKHAVSTKD |
| Parental | TLLTWKGNTTSDKERKEILETLVMLYYTLGVAWLL-QSCREAYFNMQKSERNMEELKKSYKGGASGLQAS |
| .LL..KG....DKE..EILE.LV....TLGVAWLL.....EA.F...K..R..E..K....GG..GL..S | |
| Retrocopy | ALLSYKGDMAADKESEEILEALVVPRHTLGVAWLLPNQDTEACFDL-KRQREHEGAKELHEGGVWGLPVS |
| Parental | EKDL-TIALGRASLANRRLNLALAYFEKAVDNVIAAKGDRTSDLVGLYEEIAQIEQ |
| EKD....A.GRASLA..RLN.A.AY.E.A..N.I.A.GDR.S...GL....AQ..Q | |
| Retrocopy | EKDQ<SVAWGRASLAICRLNTARAYLEQALGNIITAEGDRMSEVIGLQRNHAQARQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_991 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_991 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000003264 | 1 retrocopy |
retro_ttru_991 ,
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