RetrogeneDB ID: | retro_vpac_123 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1946:191322..191766(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL9 | ||
Ensembl ID: | ENSVPAG00000000664 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L9 [Source:HGNC Symbol;Acc:14277] |
Percent Identity: | 83.78 % |
Parental protein coverage: | 90.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NRLLPQGLAVYASPENKKLFEEEKLLRQEGRLEKIQTKAGEATVKFLRSCHLEVGMKNNVKWELNPEIVA |
NRLLP.GLA.YASPENKK.FEEE.LLRQEGRLE.IQTKAGE.TVKFLRSCHLEVGMK.NVKWEL.PEIVA | |
Retrocopy | NRLLPPGLAIYASPENKKPFEEEELLRQEGRLEMIQTKAGEVTVKFLRSCHLEVGMKSNVKWELKPEIVA |
Parental | RHFLKNLGVVVAPHALKLPEEPITQRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAARGM |
.HFLKNLGVVVAPHALKLP.E.I.Q.GE.WCEVTVNGLD.VR.PMSVVN.E.PKTKR..YWLAQQA..GM | |
Retrocopy | HHFLKNLGVVVAPHALKLPDETIPQWGE*WCEVTVNGLDPVRGPMSVVNLEGPKTKRCTYWLAQQAVKGM |
Parental | APTSSQTI |
APTSS.T. | |
Retrocopy | APTSS*TM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000258 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011403 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006271 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030456 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000664 | 1 retrocopy |
retro_vpac_123 ,
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