RetrogeneDB ID: | retro_vpac_132 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2003:2093302..2093760(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CIDEC | ||
Ensembl ID: | ENSVPAG00000002888 | ||
Aliases: | None | ||
Description: | cell death-inducing DFFA-like effector c [Source:HGNC Symbol;Acc:24229] |
Percent Identity: | 56.88 % |
Parental protein coverage: | 66.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLEDLLLKVQDTMML-ADKPFFLVLEKDGTTVETEEYFQSLAEDTMFMVLHKGQKWQPPSEQGTRYQLPL |
SLEDLL.......ML.AD..FFLVLE.DGT..E.EEYF..LAE....MVL.K.....PPSEQG..YQL.L | |
Retrocopy | SLEDLLPEF*ENLML<ADQFFFLVLEEDGTAGEAEEYFGALAEG---MVLQK---VKPPSEQGSGYQLSL |
Parental | SRKPAKKIDVARVTFDLYKVNPQDFIGCLNVKATFYGTYSLSYDLHCYRAKRIMKEALRWVLFSMQATGH |
S..PA.KI..........KVN..D..G.LN.KA.FYGT.SLSY.LH.Y..K.I.KE.L.W..FS..ATGH | |
Retrocopy | SHLPARKISETCIPSYPPKVNFRDLTGFLNLKAAFYGTCSLSYGLHGYGTKPILKETLCWAPFSL*ATGH |
Parental | MLLGTSCYLRQLLDATEGGQ |
.LLGT.CY..Q...ATEGGQ | |
Retrocopy | VLLGTPCYMKQVPGATEGGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005266 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018422 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002888 | 1 retrocopy |
retro_vpac_132 ,
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