RetrogeneDB ID: | retro_vpac_212 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2868:1906462..1906774(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM230 | ||
Ensembl ID: | ENSVPAG00000007009 | ||
Aliases: | None | ||
Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
Percent Identity: | 59.26 % |
Parental protein coverage: | 83.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LCQRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKS-PPKIPYKAIA-LATVLFLIGTFLIIIG |
LC..V.M.S.T.LA....SSKVKY.RLSSTDDGY.DLQFKKS.P...P....A.LAT.LF.IG..LI..G | |
Retrocopy | LC*CVTMLSPTSLASEMTSSKVKYLRLSSTDDGYSDLQFKKS<PS*VPT*SPAELATMLFFIGALLIKTG |
Parental | SL-LLAGYISKGGADR-AVPVLIIGILVFLPGFYHLRI |
SL.L.....SKG.A...A..VLI.GILVFL.G..HL.I | |
Retrocopy | SL<LVCVPSSKGRAHL<AILVLITGILVFLLGSFHLCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006063 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018264 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000023089 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019378 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007009 | 1 retrocopy |
retro_vpac_212 ,
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