RetrogeneDB ID: retro_vpac_382

Retrocopy location

• Organism: Alpaca (Vicugna pacos)
• Coordinates: scaffold_143283:3..416(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSVPAG00000010483
• Aliases: None
• Description: None

Sequence

>retro_vpac_382
TTTTATTTTTAAATGCTTGAGAGAAAAGTATCAGAATTTGAAATCATCCAGGAATTTATGGCTTTGGGATCTAAGAATCT
GCCTGCTGTGTTCAACTCTGGGAATGAACTACACGACAGAGACAAAAACAGATATCAAGATACTCTTCCATATGATTCAA
CACGTGTTCTTCTTGGAGAAAACAAGGACTACATCAATGCTAGTTATATTAAAATAGTCCATTCTGGAGAAGAGTATAAC
TACATCGCTACCCAAGGACCACTGCCAGGCACCGCAGATGACTTTGACAAATGGTTGTGGAAAATAACTCTAATGTTATT
GTCATGATAACCAGAGAGGTAGAAGATGGAGTTATCAAATGCCACCATTACTGGCCCATTTCTATGAAAAAGGAATTCCA
CCACATGAGCTGT

Alignment

ORF - retro_vpac_382 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.89 %
• Parental protein coverage: 52.49 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YYYEMLERKLSEFEIIEEFMALRSKNLPAVFNSGNELHNRHKNRYQDILPYDSTRVLLGENKDYINASYI
          .Y..MLERK.SEFEII.EFMAL.SKNLPAVFNSGNELH.R.KNRYQD.LPYDSTRVLLGENKDYINASYI
Retrocopy FYF*MLERKVSEFEIIQEFMALGSKNLPAVFNSGNELHDRDKNRYQDTLPYDSTRVLLGENKDYINASYI

Parental  KIVHSGEEYNYIATQGPLPGTADDFQ-MVVENN-SNVIVMITREVEDGVIKCHHYWPISMKKPLELKSC
          KIVHSGEEYNYIATQGPLPGTADDF....V..N.SNVIVMITREVEDGVIKCHHYWPISMKK.....SC
Retrocopy KIVHSGEEYNYIATQGPLPGTADDFD<QMVVENNSNVIVMITREVEDGVIKCHHYWPISMKKEFHHMSC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Vicugna pacos was not studied using RNA-Seq expression data.

ChIP-Seq

Vicugna pacos was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_vpac_382 retrocopy.

TSS

Vicugna pacos was not studied using FANTOM5 data.

Lab

retro_vpac_382 was not experimentally validated.

Homology

Retrocopy orthology:

Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Vicugna pacos	ENSVPAG00000010483	1 retrocopy	retro_vpac_382 ,