>retro_vvin_118
ATGGTGAGGTGGTGGGGTGCCACTGCTGGCCGCCTGAGAACAGCAGTATTGAACCATAGGTCATTGTTTCTCTCATCATC
CCCTCCAGCTGCTGTGTATCACACAATCCAAGCCATTCCTTGAGAGTGCACCGGGAGCAATATCTCCACAAGAGATAGAG
CCTAAGGTCAAATCCCGGCTGTGTTCACCCAACAACACCTTACTGGAAGGCAAGATCAATGGCAGATAGGTGTTAAGAGG
AAGCATCTCCTGATCACTGAGAGGAAGCAGATTCAGGCCATACTCAAGTCTATAGAACCAGAGTTTTTGCTCTACAATGT
TTCCGCTCCAGAAACATGCCGGGTCTGGATCATCCACCACCCTCCAATCTGGAACAGTCCTTCCTCTCAAGACTCATAAG
GATAAAGTAACAGGAAAGGTTTTGAACTTGGTGTTTACTTGGGCTGATGAGGGATCAGAGTTGAAGGTTGGTGTGCCTCT
TGTTTTCAAAGGAGAAGGCGTCTGTTCTGGTCTCAAGAAAGGGGGCAACCTGAACAGGATTAAGGCCTAGTTTGAAATAC
CTATGCCTGGCTGAACACATCCCTTCAAAAATTGAGCTAGATGTGAGCAACCTAGATACTGGGGATAGAATACTCATGCA
CGCTGTACAGGTTCATCCTTCCCTGAAGCTTTTAAGCAAGAATGAGACAATGCCAGTTTGTAAGATTGTGCAGCAAAGTT
GGAGAAAGCAGAATCTCGAGAGGTA
ORF - retro_vvin_118 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.41 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MSRWWGAAAGRLRTAVSNPRSLYLSSSPPAAAYHTIQAISREFTGSKVSARDRAQGRIPAVVFAQQLLTG |
| M.RWWGA.AGRLRTAV.N.RSL.LSSSPPAA.YHTIQAI..E.TGS..S.RDRA.G.IPAV.F.QQ.LTG |
Retrocopy | MVRWWGATAGRLRTAVLNHRSLFLSSSPPAAVYHTIQAIP*ECTGSNISTRDRA*GQIPAV-FTQQHLTG |
|
Parental | -GNINGRSVSRKRLLTTERKQIQAILKSVEPEFICSTTFPLQIRAGSGSSVLLESGTVLPLKIHRDEATG |
| .G.INGR.V.R.......R........S......CST.FPLQ..AGSGSS..L.SGTVLPLK.H.D..TG |
Retrocopy | >GKINGR*VLRGSIS*SLRGSRFRPYSSL*NQSFCSTMFPLQKHAGSGSSTTLQSGTVLPLKTHKDKVTG |
|
Parental | KVLNLVFAWADEGSELKVDVPLVFKGEDVCPGLKKGGYLNRI-RPSLKFLCPAEHIPSKIEVDVSNLDIG |
| KVLNLVF.WADEGSELKV.VPLVFKGE.VC.GLKKGG.LNRI.RPSLK.LC.AEHIPSKIE.DVSNLD.G |
Retrocopy | KVLNLVFTWADEGSELKVGVPLVFKGEGVCSGLKKGGNLNRI>RPSLKYLCLAEHIPSKIELDVSNLDTG |
|
Parental | DRILMHDVEVHPSLKLLSKNETMPVCKIV-AAKLERAESGEV |
| DRILMH.V.VHPSLKLLSKNETMPVCKIV.AAKLE.AES.EV |
Retrocopy | DRILMHAVQVHPSLKLLSKNETMPVCKIV<AAKLEKAESREV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_118 was not experimentally validated.
Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.