RetrogeneDB ID: | retro_vvin_17 | ||
Retrocopylocation | Organism: | Grape (Vitis vinifera) | |
Coordinates: | 19:15811786..15812002(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | VIT_19s0140g00250 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | VIT_08s0105g00510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGGNFMHRVISYVVNEVLVNSLANSPAFQRFAVRTSRRMEDISNKAAQKRQELAEQVKELSKNFESPKN |
MA.GNFMH.VISYVVNEVLVNSLANSPAFQRF.VRTSRRMEDISNKAAQKRQELAEQVKELSKNFESPKN | |
Retrocopy | MARGNFMHKVISYVVNEVLVNSLANSPAFQRFSVRTSRRMEDISNKAAQKRQELAEQVKELSKNFESPKN |
Parental | Q |
Q | |
Retrocopy | Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Solanum tuberosum | PGSC0003DMG400011024 | 1 retrocopy | |
Vitis vinifera | VIT_08s0105g00510 | 3 retrocopies |
retro_vvin_12, retro_vvin_17 , retro_vvin_25,
|