RetrogeneDB ID: | retro_vvin_177 | ||
Retrocopylocation | Organism: | Grape (Vitis vinifera) | |
| Coordinates: | 9:17447561..17447875(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | VIT_07s0005g04750 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_vvin_177
AACTACTCCAAATTTGTCAATCGTGATAAACACATCCCCGAATTGTCTGATTCTGATGTTGAAGAGTTCATCCTTCTGAT
CCCGCCTATGGTCCCACTCTGAAAATTACTAGGGAAGCAGACAAGTTTGCTGTTGCCGGAGCTGTTATTGGAGCAGTATC
AACTGTTTCTGTTTCCTGGAAGTATTCAAGGAGCCCACATGGTGCGGCACTATCATTTGCTGCAAGGGGTGTGTTTGGTG
TGACATTTGGACAGGAATTTGCAAACCACTGGCTGCAACTTTACAGGCTGGACACCTTGGGTGCAGAGGTGAAG
AACTACTCCAAATTTGTCAATCGTGATAAACACATCCCCGAATTGTCTGATTCTGATGTTGAAGAGTTCATCCTTCTGAT
CCCGCCTATGGTCCCACTCTGAAAATTACTAGGGAAGCAGACAAGTTTGCTGTTGCCGGAGCTGTTATTGGAGCAGTATC
AACTGTTTCTGTTTCCTGGAAGTATTCAAGGAGCCCACATGGTGCGGCACTATCATTTGCTGCAAGGGGTGTGTTTGGTG
TGACATTTGGACAGGAATTTGCAAACCACTGGCTGCAACTTTACAGGCTGGACACCTTGGGTGCAGAGGTGAAG
ORF - retro_vvin_177 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.79 % |
| Parental protein coverage: | 71.92 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | NYAKFVNRDKPIPKWSDSDVEEFIA-SDPVYGPTLRTTREAAKFAVAGAVIGAVSTAAVSWKYSRSPHGA |
| NY.KFVNRDK.IP..SDSDVEEFI..SDP.YGPTL..TREA.KFAVAGAVIGAVST..VSWKYSRSPHGA | |
| Retrocopy | NYSKFVNRDKHIPELSDSDVEEFIL<SDPAYGPTLKITREADKFAVAGAVIGAVSTVSVSWKYSRSPHGA |
| Parental | ALSFAAGGVFGVTFGQEFASHWLQLYRLDTLGAEVK |
| ALSFAA.GVFGVTFGQEFA.HWLQLYRLDTLGAEVK | |
| Retrocopy | ALSFAARGVFGVTFGQEFANHWLQLYRLDTLGAEVK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_177 was not experimentally validated.
Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Vitis vinifera | VIT_07s0005g04750 | 1 retrocopy |
retro_vvin_177 ,
|