>retro_vvin_26
ATGCTGACTTTGAATCTTGTTCCTTGTAGCAATATCACTTTATCCAAGCCAAAAAGCCATCAGTACTCTATAAATGCTCT
CCACAGGGCTCAGAACCAAGGTGACTTCCACTTGCCTAGGGGTCTGTTCAACAAGCCCAAGTCTCAGGTAATCTCAAACT
TGAGTAGAATCCATGGATACCCTTTTGGGTTTTGTGCAAAACCCAGTTCTCAGATCCATGATACAAGCGCAAAGATCAAA
TCTTTGGACACAACGGGTGAGCACCCATCTGGGGTTGGTGCAAAGCCCAGATCTTGGGTTGCTAAAGCTGCTGAGTTTGA
GGGGGAAAGTGAAGTTTCCAAGCCTAACAAGACCCTTCAACTTGGTATTGTGTTTGGGATGTGGTATTTTCAGAATATTG
TGTTCAATATCTACAACAAGAAGGTGTTGAATCTGTTCCCCTTTCCATGGCTTCTTGCCTCTTTTCAGCTATTTGTTGGG
TCTGTTTGGATGCTCATTCTCTGGTCTTTTAAGCTCCAGCCATGCCCAAAAATCTCAAAACCTTTCATTGTTGCTCTTCT
TGGGCCTGCACTGTTTCACACAATAGGCCACATCTCCGCCTGTGTTTCTTTCTCTAAGGTGGCTGTCTCGTTCACCCATG
TCATCAAATCTTCAGAACCAGTTTTCTCAGTCATTTTCTCAACCATTTTAGGTGATAACACCTACCCTTTACGTGTCTGG
CTTTCAATCCTCCCCATTGTTCTAGGTTGCTCTCTTGCCGCTGTCACCGAAGTCTCCTTCAATTTGCAAGGCCTGTGGGG
GGCTTTGATCAGCAATGTGGGGTTCGTTCTTCGCAACATTTACTCAAAGCGAAGCTTAGAGAGCTTCAAGGAAGTGAATG
GGCTGAATTTATATGGTTGGATCAGTATAATTTCATTGCTGTATCTGTTTCCTGTGGCAATTTTCGTTGAAGGGACTCAA
TGGATTGAAGGGTATCACAGAGCAATCCAAGCAGTGGGAAAACCAACCACATTTTATATATGGGTGATGTTGTCCGGGGT
GTTTTACCATCTCTACAATCAGTCATCATATCAAGCACTTGATGACATTAGCCCACTGACCTTCTCTGTTGGAAACACAA
TGAAGAGGGTGGTAGTGATTGTAGCCACTATTTTGGTGTTCAGAAATCCTGTTAAGCCTTTGAATGCGCTTGGATCTGCC
ATTGCGATTTTTGGGACTTTCTTGTATTCGCAGGCAACATCCAAGAAAAGCCCAAAGAAAATTGAAGGTGAAAAGAGTAG
TTAA
ORF - retro_vvin_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.37 % |
Parental protein coverage: |
77.86 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ELSDQEARSEAAQKLKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLATGSLMMLISWAVRIAE |
| E.......S.....L..GI.F..W...N.VFNIYNKKVLN.FP.PWL.....L..GS..MLI.W...... |
Retrocopy | EFEGESEVSKPNKTLQLGIVFGMWYFQNIVFNIYNKKVLNLFPFPWLLASFQLFVGSVWMLILWSFKLQP |
|
Parental | PPKTDLDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYFSLL |
| .PK....F...L...A..HTIGH..A.VS.SKVAVSFTH.IKS.EP.FSV..S..L...T.P..V..S.L |
Retrocopy | CPKISKPFIVALLGPALFHTIGHISACVSFSKVAVSFTHVIKSSEPVFSVIFSTILGDNTYPLRVWLSIL |
|
Parental | PIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKG-KSVGGMNYYACLSMLSLLILTPFAI |
| PI..GC.LAAVTE..FN..G..GA.ISN..FV.RNI.SKR.....K.V.G.N.Y...S..SLL.L.P.AI |
Retrocopy | PIVLGCSLAAVTEVSFNLQGLWGALISNVGFVLRNIYSKRSLESFKEVNGLNLYGWISIISLLYLFPVAI |
|
Parental | AVEGPQMWAAGWQKAISQIG--PNFIWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSS |
| .VEG.Q.W..G...AI...G....F..WV....VFYHLYNQ.SY..LD.ISPLTFS.GNTMKR..VIV.. |
Retrocopy | FVEGTQ-WIEGYHRAIQAVGKPTTFYIWVMLSGVFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVAT |
|
Parental | IIIFHTPVQPINALGAAIAILGTFLYSQA |
| I..F..PV.P.NALG.AIAI.GTFLYSQA |
Retrocopy | ILVFRNPVKPLNALGSAIAIFGTFLYSQA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_26 was not experimentally validated.
Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.