RetrogeneDB ID: | retro_xtro_45 | ||
Retrocopylocation | Organism: | Xenopus (Xenopus tropicalis) | |
Coordinates: | GL177336.1:123..1296(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | acat2 | ||
Ensembl ID: | ENSXETG00000021174 | ||
Aliases: | None | ||
Description: | acetyl-CoA acetyltransferase 2 [Source:Jamboree;Acc:XB-GENE-5929870] |
Percent Identity: | 54.96 % |
Parental protein coverage: | 98.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ERVAIVSAARTPIGSFNGALSTLPAHTLGSTVIKEVLKRAAIQPQEVSEVIFGQVLTAGAGQNPARQASV |
E...IVSA.RTP.G.F.G.L...PA..LG..VI.E.L.RA......V.EVI.GQVL.AG.GQNPARQA.. | |
Retrocopy | EDIVIVSAVRTPVGKFGGSLAKTPASALGAIVIQEALARAQVGLDQVGEVILGQVLAAGCGQNPARQALI |
Parental | AAGVPYSIPAWSCQMICGSGLKAVSLGAQSIKTGEADIVVAGGMESMSQAPHLVH-MRAGVKAGDVSLQD |
.AGV....PA......CGSGLKAV.L.AQ...TG...IVVAGG.E.MS..PH.....R.G...GD..L.D | |
Retrocopy | KAGVAKETPALTINAVCGSGLKAVMLAAQAVATGDSEIVVAGGQENMSLSPHILNGSRDGQRMGDWKLTD |
Parental | SIMCDGLNDAFYKYHMGITAENVAKQWKVTREEQDLLAVQSQNRTEAAQKAGYFDKEIVPVTVPSRKG-P |
....DGL.D....YHMGITAENVAKQ...TR..QD.LA..SQ....AAQ.AG.F..EIV.V..P..KG.P | |
Retrocopy | TMIVDGLWDVYNQYHMGITAENVAKQYGITRDMQDALALASQQKAAAAQDAGRFADEIVGVSLPQKKGDP |
Parental | VEVKVDEFPRHGSNVEAMSKLKPYFLKDGSGTVTPANASGINDGAAAVILIKESEARRRGLVPMAHIVSS |
....VDE........EA...L.P.F..D..GTVT..NASGINDGAAAV.......A...GL.P.A.I... | |
Retrocopy | ILFNVDEYLNRKTSAEALAGLRPAF--DKAGTVTAGNASGINDGAAAVLVMSAKKAAALGLKPLARIAAY |
Parental | AQVGLDPSIMGVGPIAAIRKAVEKAGWSLDEVDLFEINEAFAAQAVAVVKDLGLNPEKVNCQGGAVALGH |
A..GLDP..MG.GP..A.RKA...AGW....VDLFE.NEAFAAQA.AV.K.LG..P.KVN..GGA.A.GH | |
Retrocopy | ATSGLDPATMGMGPVPASRKALQRAGWNVADVDLFELNEAFAAQACAVNKELGIDPAKVNVNGGAIAIGH |
Parental | PLGMSGCRILVTLLYALERTGGKKGVAALCIGGGMGIAMCIER |
P.G.SGCR.LVTLL....R...KKG.AALCIGGGMG.....ER | |
Retrocopy | PIGASGCRVLVTLLHEMQRRNAKKGLAALCIGGGMGVSLALER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .35 RPM |
SRP007412_heart | 0 .00 RPM | 3 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .04 RPM |
SRP007412_liver | 0 .00 RPM | 29 .48 RPM |
SRP007412_skeletal_muscle | 0 .00 RPM | 1 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002827 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011777 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002502 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012843 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007156 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019189 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000021174 | 1 retrocopy |
retro_xtro_45 ,
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