« Back to Solanum tuberosum searchLow confident - view alignments »


Detailed information on CNT0010996


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FUY2|LEUNG_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003540, E-value = 3e-08 (V. vinifera)
CNT0021980, E-value = 3e-36 (A. trichopoda)
CNT0032680, E-value = 2e-27 (O. sativa)
CNT0038518, E-value = 2e-09 (S. moellendorffii)
CNT0036087, E-value = 1e-19 (C. reinhardtii)

Expression of CNT0010996

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)12.98810.51441.07551.23P. inf treated RB tissue, 24hpi (SRR864485)P. inf treated RB tissue, 48hpi (SRR865383)flesh (SRR1200975)skin (SRR1170971)0510152025303540455055

Peptides detected in this lncRNA

>peptide 1 (40 aa)
NICNISSSKSNPSFLNPIIRKRREFQFHERKNSKKKAEEN*

>peptide 2 (55 aa)
MEAWQILFVEMIRLGGKENTLFHLRGLPIAQELQTLLDLPQVLLLQRHLLTHLEM*

>peptide 3 (41 aa)
MFVSVQAWQDLQHLLLTKLSGFGMLTIRATHFGLSLGILLV*

>peptide 4 (58 aa)
MALLRRHQINWLIWIVLRLMVLLKIMLNRFYLKTRWTLEMQLVVVWMLVKLQASHLMK*

>peptide 5 (50 aa)
MFYVHCKIFYWCLKRYLCLSYLALGFVFCYFFFPHLCLKDPCTNPILCSS*

>peptide 6 (37 aa)
MLLVVFYLNGGLYFGTYSSQGPMRSTRKLLPLISRHK*

>peptide 7 (58 aa)
MREKIVKKKLKKIKKKVILFLSFSSVILSPSIFKIPILYAKTLIGQGRRSRFLRIWHY*

>peptide 8 (624 aa)
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQIMKAREQQQQQQQSQQPQ
HLQQQQQQQQQQQQQQQHQLQMQQILLQRQQQQQQQQQHQQQQQQQQQQQQQQQQQQQHSGNPQQSQQQQLPQHSLSGQQPQSSNHSLQQDKIMGSGTGD
GSMANSFRGNDQTGRKRKHPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPVLQHSGSSSKPLMMFGADNNGTLTSPSNQLADMDRFEVDGS
LEDNVESFLSQDEVDPRDAVGRGMDVSKVAGFSFNEVNAVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWYTDTLKQKTTLEEHSSLITDVRFSPSMAR
LATSSFDKTVRVWDADNPGYSLRTFTGHSAGVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQVRFQPRIGRYLAAAAENVVSILDVET
QACRHSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLRSGSEGDCLHELSSNGNKFHSCVFHPAYSSLLVIGCYQSLELWNMNENKTMTLTGHEGLIA
SLAVSGVAGLVASASHDKFVKLWK*

Sequence

>CNT0010996
CAATATCTGCAACATCAGCTCCAGCAAATCCAACCCTTCTTTTCTAAACCCCATCATCAGAAAAAGAAGAGAATTTCAGTTTCATGAGAGAAAAAATAGT
AAAAAAAAAGCTGAAGAAAATTAAAAAAAAAGTCATTCTTTTTCTTTCTTTTTCATCAGTCATACTGAGTCCATCCATCTTCAAGATTCCAATTTTATAT
GCAAAAACACTAATAGGGCAAGGAAGAAGAAGTAGGTTTCTAAGGATCTGGCATTATTAAGAAGAGTTTGTTTGAATTACTGGATTACTCAACATGTCTC
AGACCAACTGGGAAGCTGATAAAATGTTAGATGTCTATATTCATGATTATTTAGTGAAAAGGGATCTAAAGGCTTCTGCTCAGGCCTTTCAAGCTGAAGG
GAAAGTGTCATCTGACCCTGTTGCTATTGATGCTCCTGGTGGTTTTCTATTTGAATGGTGGTCTGTATTTTGGGACATATTCATCGCAAGGACCAATGAG
AAGCACTCGGAAGTTGCTGCCTCTTATATCGAGACACAAATAATGAAGGCAAGGGAGCAGCAGCAACAACAGCAGCAATCTCAACAACCTCAACATCTGC
AGCAGCAACAGCAACAACAGCAACAGCAACAACAACAGCAGCAGCACCAACTGCAGATGCAGCAGATTTTGTTGCAGAGGCAGCAACAGCAGCAGCAACA
GCAGCAACACCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAACAACAGCATAGTGGTAATCCACAGCAGTCGCAACAGCAG
CAGCTTCCTCAGCACTCACTTTCTGGTCAGCAACCACAGAGTTCAAATCACAGTCTACAACAAGATAAAATTATGGGCAGTGGCACAGGAGATGGAAGCA
TGGCAAATTCTTTTCGTGGAAATGATCAGACTGGGAGGAAAAGAAAACACCCTGTTTCATCTTCGGGGCCTGCCAATAGCTCAGGAACTGCAAACACTGC
TGGACCTTCCCCAAGTTCTGCTCCTTCAACGCCATCTACTCACACACCTGGAGATGTGATTTCAATGCCTGTCTTACAACATAGTGGAAGTTCTTCGAAG
CCATTGATGATGTTTGGAGCAGATAATAATGGCACTCTTACGTCGCCATCAAATCAATTGGCTGATATGGATCGTTTTGAGGTTGATGGTTCTCTTGAAG
ATAATGTTGAATCGTTTTTATCTCAAGACGAGGTGGACCCTCGAGATGCAGTTGGTCGTGGTATGGATGTTAGTAAAGTTGCAGGCTTCTCATTTAATGA
AGTGAATGCTGTTCGGGCTAGTAGCAGTAAAGTTGTTTGTTGTCATTTCTCCTCTGATGGAAAATTGCTAGCTAGTGGTGGCCATGACAAAAAGGCTGTT
TTATGGTATACTGATACCTTAAAACAAAAAACAACACTTGAGGAGCACTCATCACTCATTACTGATGTTCGTTTCAGTCCAAGCATGGCAAGACTTGCAA
CATCTTCTTTTGACAAAACTGTCAGGGTTTGGGATGCTGACAATCCGGGCTACTCACTTCGGACTTTCACTGGGCATTCTGCTGGTGTAATGTCACTCGA
CTTCCATCCTAATAAAGAAGATCTCATCTGTTCTTGTGATGGTGATGGTGAAATAAGATACTGGAGTATTAACAATGGTAGCTGCACAAGGGTGTTCAAG
GGTGGGACGGCTCAGGTGAGATTCCAGCCTCGCATTGGTAGATATCTCGCTGCTGCTGCCGAGAACGTTGTATCAATACTTGACGTGGAGACACAAGCTT
GTCGGCATTCGTTAAAGGGCCACACGAAACCAATCCATTCTGTCTGCTGGGATCCCTCAGGCGAGCTCCTCGCATCTGTTAGTGAAGACTCTGTCAGGGT
TTGGACATTGAGATCGGGTAGTGAAGGTGACTGTCTACATGAGCTTAGTTCAAATGGCAACAAATTCCACTCGTGTGTTTTCCACCCTGCATATTCGTCG
TTGCTAGTTATCGGCTGTTACCAGTCTTTGGAGCTATGGAACATGAATGAGAACAAGACAATGACTCTCACAGGCCATGAAGGATTAATTGCTTCCTTGG
CTGTATCGGGAGTCGCGGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTTAAGCTCTGGAAGTAATATGTTCCATCCATGGTTTCCTTTTGGAACCC
ATGTTTTATGTCCACTGTAAAATATTTTATTGGTGTCTGAAGAGATACTTGTGTCTGTCTTATCTAGCATTAGGCTTTGTGTTCTGTTATTTTTTTTTCC
CCCATTTATGCCTGAAAGATCCATGTACTAACCCCATCCTCTGCTCATCTTGACTACTGGTACTTAACTTTACCTTATTAAAACCTAAAAGAAGAAAATT
TGCTGTTGAGTTGATGCTATGTTTTTTTCCCTCTCCACAAATGGCTATGTCAGTTGGAATGATCAAAGTGTAATGCCACTGATGCAACACAAG