« Back to Solanum tuberosum search


Detailed information on CNT0012353


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O14190|ALG13_SCHPO, E-value = 2e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000591, E-value = 1e-07 (G. max)
CNT0030549, E-value = 1e-11 (O. sativa)

Expression of CNT0012353

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.75610.4640.9340P. inf treated RB tissue, 24hpi (SRR864485)P. inf treated RB tissue, 48hpi (SRR865383)flesh (SRR1200975)skin (SRR1170971)01234567891011

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VNSHQPSVPVPAAGDHQSTSPFNFSTKSNYSNC*

>peptide 2 (62 aa)
MDNHQSELAEELAERKHLYCARPQTLYKTISDMDPGSLVPYQPGDAKPVAELIYRYLGFSDD*

>peptide 3 (100 aa)
MGDIDDTAKEKRVVFVTVGTTSFDALVRAVDTPEVKHELFKKGYTDILIQMGRGSYILTRASAENGFPALDYFTFSSSIADYLKSASLVISHAGLQKLQG
*

>peptide 4 (42 aa)
LILINLLSRCRPPEITRVLHRSISPPNQTIRIVECNLEIVNG*

Sequence

>CNT0012353
GTTAATTCTCATCAACCTTCTGTCCCGGTGCCGGCCGCCGGAGATCACCAGAGTACTTCACCGTTCAATTTCTCCACCAAATCAAACTATTCGAATTGTT
GAATGTAATTTGGAAATTGTAAATGGGTGATATAGATGATACCGCAAAGGAGAAGAGAGTAGTTTTTGTGACCGTGGGGACAACTTCTTTTGATGCTCTT
GTAAGAGCAGTGGATACTCCGGAAGTTAAGCATGAATTGTTCAAGAAGGGTTACACCGATATTCTGATTCAAATGGGGCGAGGATCGTACATCCTCACAA
GGGCGTCTGCTGAAAATGGTTTCCCAGCTCTTGACTACTTCACATTTTCATCAAGCATAGCTGACTATTTGAAGTCAGCATCACTTGTTATCAGCCATGC
AGGACTTCAAAAGTTGCAAGGCTAAGGCTATGTAATCACACATTTGAATACTGCAGGTTCAGGAAGCATATTTGAGACATTACGATTAGGCAAACCGTTA
ATCGTGGTAGTCAATGAGGATCTAATGGACAACCATCAAAGCGAGCTTGCAGAGGAACTGGCTGAGAGAAAACATTTGTATTGTGCTCGTCCACAAACAT
TATACAAGACTATATCGGATATGGATCCGGGGTCTCTTGTTCCATATCAACCAGGTGACGCGAAACCAGTTGCTGAACTTATTTATAGATATTTAGGTTT
CTCAGATGATTGATGCAACTTATTGTTCTGTAGTTGACATGAAGTGAAGTTCAATTGTATGTGGTTTATAGAGCATAATCTTTATCCTCAAATATTCTGT
TATATTTGTTTCTAATGATATTTTTTGTGTTTGAG