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Detailed information on CNT0030549


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O14190|ALG13_SCHPO, E-value = 8e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000591, E-value = 3e-13 (G. max)
CNT0012353, E-value = 2e-11 (S. tuberosum)

Expression of CNT0030549

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)12.86110.96613.97320.45920.45918.93720.05319.20117.265shoot (SRR1449240)shoot (SRR1460119)shoot (SRR1460120)stem (SRR1182457)stem (SRR1182458)stem (SRR1182459)stem (SRR1182460)stem (SRR1182461)stem (SRR1182462)012345678910111213141516171819202122

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MGDRERRTVFVTVGTTCFDALVKAVDSPQVKEALLEKGYTDLIIQMGRGTYVPSKVNEFLFHSF*

>peptide 2 (37 aa)
MQAYTQPFWYDSNSPSVIRENSLNCLKTEEMHLKLHC*

>peptide 3 (62 aa)
MDNHQSELAEELATRKHLFCASPQTLGETIQEMDIETLNPYVPGDAKPVVSLINKFFGFPDD*

>peptide 4 (29 aa)
MFHLRSMNFSFIPFKLPLYQHGIPACSAC*

>peptide 5 (76 aa)
ILSKKVRPMYPPQLGIDFRRLLLVSSPLRRLRRSPSRERAGAPGAGAVVRPVASARILCSFQNKWEIGKDELCLSQ*

Sequence

>CNT0030549
ATTCTATCTAAAAAGGTGCGGCCCATGTATCCCCCCCAGCTCGGCATAGACTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGAT
CTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGTGCTCGTTTCAGAATAAATGGGAGAT
AGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAA
AAGGTTATACTGATCTAATAATTCAAATGGGCCGAGGTACATATGTTCCATCTAAGGTCAATGAATTTCTCTTTCATTCCTTTTAAATTGCCACTTTACC
AGCACGGAATTCCAGCTTGTTCTGCATGTTAATTCTTCTTTTGGTGCTTTTTTTTTGTCTGTGTGCGTGTTCTGTTCTTGGGGTTAATTCTTGATGAGTT
GTCAGATGAACAGAAGTTGCGCGGTTTGATTTCTTGTGAAGAGTTCTGTTTGGATTGCACATTTCTTATTTTCAGTTTTATATAACCAGTTTCGAGTGAA
TGTTTCTAAGTTGAATGGGTAGGGACTATATCCAATCATTGAATGATTAGGGGATGTTCCTAACATGTGGCATGAATTTATGTTATATTAGCAGATAATA
ATTGCTTTACTCTGCTAGTGATTCCTCTGTTCTACCTGAAACATTTGTAAGCACCATGTTGATGGTTGTGAAAGTGAAGTGAAACCAGCCAGAAACTTTG
ATATATTTGAATACAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTCACTTTTTCGCCAAGCATTGCTGATTATATAAGGGATGCTTCCCTGGTC
ATCAGTCATGCAGGTTCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAGGATTTGATGGACAATCATCAGAGTG
AGTTAGCAGAGGAACTGGCTACAAGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCC
TTATGTGCCAGGGGATGCCAAACCAGTTGTATCGCTGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTTTTTCTTATTCCCGCCTTTTCTGT
TGTAAGAAAATGAAGTCACATATGGAAGAGGTAGCTGACAAAAGTGAAGTTTCATAGTGGCATGTCACATGCAAGCCTATACCCAACCATTTTGGTATGA
TTCCAACTCACCAAGTGTAATCCGAGAGAACTCTTTGAATTGTTTGAAAACGGAGGAAATGCATCTTAAACTCCATTGTTAAGCCATTGGGTGCGAAGTA
GTATGATTTTTTTTTATTTGAAACTAAGTAGTATGATGTTTATTCCGG