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Detailed information on CNT0021795


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35135|UBC4_SOLLC, E-value = 6e-104

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002539, E-value = 3e-40 (G. max)
CNT0009352, E-value = 4e-42 (S. tuberosum)

Expression of CNT0021795

ERR364329: 263.015 RPKM

Peptides detected in this lncRNA

>peptide 1 (193 aa)
PSSRPLSINSLSHPSSSSVLHSPPLYFSLCSSSSIRALFLWVFLAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIH
FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*

>peptide 2 (34 aa)
MIGGMIKKIPHSFFSTTPQSQVQKYFRFETCRFS*

>peptide 3 (29 aa)
MHDWGNDKKDSPFFLFYNASKPGSKIFSV*

>peptide 4 (91 aa)
MIPWCQRLRTCTRLTGASMRLPHGVGPKSMPWASLRLQLCMNMSKKGKRSFLRTASLSCSNSTLSPSLPLLSYSVFSPCACVVCDLCPYFF*

Sequence

>CNT0021795
CCTTCCTCTAGACCCCTCTCTATAAATTCTCTCTCTCACCCATCATCATCATCTGTTCTCCATTCTCCCCCACTTTACTTTTCTCTATGCTCTTCATCTT
CCATTAGGGCTTTATTCCTCTGGGTTTTTTTGGCGATGGCTTCGAAGAGGATCCTGAAAGAGCTCAAGGATCTTCAGAAGGACCCTCCTACGTCATGCAG
TGCAGGACCTGTAGCTGAAGATATGTTTCATTGGCAAGCAACAATCATGGGTCCTCCTGATAGTCCATATGCAGGAGGAGTATTTCTAGTTACTATTCAT
TTTCCACCAGATTATCCATTTAAGCCACCTAAGGTGGCTTTCAGGACCAAAGTTTTCCATCCGAATATTAACAGTAATGGCAGCATTTGTCTTGATATCT
TGAAGGAGCAGTGGAGTCCTGCTTTGACCATATCAAAGGTCTTGCTTTCAATTTGTTCTTTGCTGACGGATCCAAATCCCGATGATCCCTTGGTGCCAGA
GATTGCGCACATGTACAAGACTGACCGGAGCAAGTATGAGACTACCGCACGGAGTTGGACCCAAAAGTATGCCATGGGCTAGTCTCAGACTTCAGCTATG
TATGAATATGAGTAAGAAAGGAAAAAGATCTTTCCTAAGGACTGCCAGCCTTTCTTGCTCAAACTCTACGCTTTCCCCGTCATTGCCCTTATTGTCGTAC
TCAGTCTTTTCTCCCTGTGCATGTGTTGTGTGTGACTTATGCCCATACTTCTTTTGAGAAAAATATAAATGCATGATTGGGGGAATGATAAAAAAGATTC
CCCATTCTTTCTTTTCTACAACGCCTCAAAGCCAGGTTCAAAAATATTTTCGGTTTGAAACCTGTCGTTTCAGCTGAATCTGGAATTGACAACTTCTTAC
ACGTATCCATAAAAAACAAATAATTCTTTTTCTGGATTGTGGGC