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Detailed information on CNT0009352


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35133|UBC10_ARATH, E-value = 2e-103

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002539, E-value = 5e-26 (G. max)
CNT0021795, E-value = 4e-42 (A. trichopoda)

Expression of CNT0009352

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)41.42574.52207.732203.357P. inf treated RB tissue, 24hpi (SRR864485)P. inf treated RB tissue, 48hpi (SRR865383)flesh (SRR1200975)skin (SRR1170971)020406080100120140160180200220

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GQPEPLNIIKRKKTKKTAANKKKKKVIYSSTQFHLLVSCKDSAAFPIF*

>peptide 2 (44 aa)
MLGVFFWSLSIFLRIIHSNLLRLLLGQKFSIQISIVMGVYAWTY*

>peptide 3 (41 aa)
MTHWFLRLLTCTRQTSLNTKELPGVGPRSMPWVKTFNLMMA*

>peptide 4 (32 aa)
MLGHTEGAVEPCLNYFQGFAFNLLAFDGPKPR*

>peptide 5 (148 aa)
MASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS
KVLLSICSLLTDPNPDDPLVPEIAHMYKTDKSKYEGTARSWTQKYAMG*

Sequence

>CNT0009352
GGGGCAGCCAGAACCATTGAATATAATAAAGAGAAAAAAAACGAAGAAAACAGCTGCAAATAAAAAGAAAAAAAAAGTGATATATTCCTCAACCCAATTT
CATCTACTAGTTTCGTGTAAAGATTCAGCAGCTTTTCCGATTTTCTGATCAGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTG
AAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACTTCATGCAGCGCTGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCT
CTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACTATCCATTTTCCTCCGGATTATCCATTCAAACCTCCTAAGGTTGCTTTTAGGACAAAAGTTTT
CCATCCAAATATCAATAGTAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAGGTTTTGCTTTCAATTTGC
TCGCTTTTGACGGACCCAAACCCCGATGACCCATTGGTTCCTGAGATTGCTCACATGTACAAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTT
GGACCCAGAAGTATGCCATGGGTTAAAACATTTAACCTTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTGTTTTCTCTATTCTC
CATTAACAATGTGTAGAATAGCATTAGGCGTTGCTCCTCTACAGGAAGAACGATGATGCTTTGAATTTCTTTATGTATGAATGCTAATATTTGAATTTTG
AACATGTGTGGGAAGCGTATTTATCTGGTTTTGGATTGTTTCTTTTGGTTCGACGATCTATTAGTGTAAATATTTCCATACTTCAAAAGCCTTTTGTAAA
TTCTATCGTGTTTATTATTACGGATAACTATAGTTCAG