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Detailed information on CNT0029379


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033555, E-value = 2e-06 (P. patens)
CNT0039396, E-value = 2e-07 (S. moellendorffii)
CNT0036890, E-value = 6e-07 (C. reinhardtii)

Expression of CNT0029379

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.546002.032.030.8371.7961.9110.438shoot (SRR1449240)shoot (SRR1460119)shoot (SRR1460120)stem (SRR1182457)stem (SRR1182458)stem (SRR1182459)stem (SRR1182460)stem (SRR1182461)stem (SRR1182462)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.12.2

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRVAKSTGLIGTFAGEDFYQEAVSFGSSLVDTTPL*

>peptide 2 (33 aa)
MLTCSMRVLGTRGVANNDCSLKVEMSDFSEMVL*

>peptide 3 (95 aa)
MILSPLERPSSSICASMLPHLWCFSCWVTQKSEKITQRWLRMLLLIFLKSWVLQLSSFIARPVLILMWPASKDELMSGEVFYEYLSRCGWRNQLD*

>peptide 4 (142 aa)
NSGGSSSCSSSSSSRRSNNMNSDRSRERGSNGINNGHTESDESREKERKRWMRLGILALLLLAFHGSLVLITWKLLKHITDESELDVYIALFWFGLFIAL
QAGKYLVDTAYDFEPTRKTEFIHLCLHASTLVVFLLLGHTKI*

Sequence

>CNT0029379
CAACAGCGGTGGCAGCAGCAGCTGCAGCAGCAGTAGCAGCAGCAGGAGGAGCAACAACATGAACAGCGATAGGAGTAGGGAGAGAGGCAGCAATGGGATC
AACAATGGCCATACTGAGAGTGATGAAAGTAGGGAAAAAGAACGCAAGCGTTGGATGCGGCTAGGTATACTGGCACTATTGCTTCTTGCGTTCCATGGCT
CACTTGTGCTAATTACCTGGAAGCTGCTGAAACACATTACAGATGAGTCAGAGCTTGATGTGTATATTGCTCTCTTTTGGTTTGGTCTCTTTATAGCTCT
CCAAGCTGGGAAGTATCTTGTTGACACTGCCTATGATTTTGAGCCCACTAGAAAGACCGAGTTCATCCATCTGTGCCTCCATGCTTCCACACTTGTGGTG
TTTCTCTTGCTGGGTCACACAAAAATCTGAAAAAATCACTCAAAGGTGGTTGCGCATGCTGTTGCTTATTTTCTTGAAATCATGGGTGCTGCAGCTATCC
AGTTTTATTGCAAGGCCAGTGTTGATATTGATGTGGCCGGCCTCTAAAGACGAACTTATGTCTGGTGAAGTCTTCTACGAGTACTTATCAAGATGCGGGT
GGCGAAATCAACTGGATTGATTGGAACGTTTGCAGGAGAGGATTTCTACCAGGAAGCGGTTTCTTTTGGATCGTCGCTAGTAGATACTACTCCTTTGTGA
TTGCACTGGTTTTTTGGCTATTGTTCTATCATCCTTTGATGCTCACATGTAGCATGAGGGTCTTAGGTACTCGGGGTGTTGCAAACAATGATTGTTCGCT
CAAAGTAGAAATGTCAGATTTTTCTGAAATGGTTTTGTGAGACAAGCTCTTACTCCTACGGACCTTGCGACCTTGCTTGTAGCCTCACCCTTCTCCAG