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Detailed information on CNT0030114


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4J5S1|CLU_ARATH, E-value = 1e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001002, E-value = 6e-14 (G. max)

Expression of CNT0030114

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.5965.6570.9699.4649.4648.71813.8539.9239.618shoot (SRR1449240)shoot (SRR1460119)shoot (SRR1460120)stem (SRR1182457)stem (SRR1182458)stem (SRR1182459)stem (SRR1182460)stem (SRR1182461)stem (SRR1182462)0123456789101112131415

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIKHYCQKAVCSCCHSVIRTTNSNKFCKSLHHHV*

>peptide 2 (29 aa)
MLLLSFCDKDHKQQQVLQEPASPCIINRM*

>peptide 3 (30 aa)
MMCQDTRSGLYLCAIVNSILKLSLVQESLG*

>peptide 4 (32 aa)
MYVCMYVFNPLTSVYFSTSCNMNEKHFALYYT*

>peptide 5 (42 aa)
MTPTGFDRLLMSMQHAGVKTSWLNMLINRKYLHLIQLQNPKG*

>peptide 6 (39 aa)
MKVTKCNMNITQPFFHHCHINISCSSIRMRGSTCQVQKI*

>peptide 7 (66 aa)
MSGAKDIGHDSHTLMPILYAAGGNRKLQDLHSFSLYLDDLVQVLSHLYLKPSVDRLLPGKIESEHL*

Sequence

>CNT0030114
TGAACATCAAAACTGATGTGGCCATGAATTAGACTACTGTATGTGTCGGAACTCAATTGAGAACTAAAACAGATAGGGTTGCAAACCTGTATGTGATCAG
CACCAAGCAACCTCTTGTTGCATTTTAGAGCCTCATGAAGGTAACGAAGTGCAACATGAACATTACCCAGCCCTTCTTCCATCATTGCCACATTAATATA
AGTTGCAGCAGTATTAGGATGAGAGGGTCCACATGTCAGGTGCAAAAGATATAGGGCACGATTCACATACTTTAATGCCAATTCTGTATGCTGCAGGCGG
TAATAGAAAACTGCAAGATCTCCATAGCTTTTCATTGTATCTGGATGATCTAGTCCAAGTTCTCTCTCATTTATATCTAAAGCCTTCTGTTGATAGATTG
TTGCCTGGTAAAATAGAGAGTGAACATTTATAAAGCCAGTCTTCACAGCACTGGATAGTATGTATGTATGTATGTATGTATTTAACCCCTTGACAAGTGT
ATATTTCAGTACTTCATGTAACATGAATGAGAAACATTTTGCATTATATTACACTTAAGCAGCTTACAGTCACAATTTCCACATGATCATCATATTAACT
GTTGTTCAAAATAATTCTGCATGATTCCCATTCATCGTACCCAAGATTTGTCTAGAATCAGAATTCAACTTTAACAATATTTGCACAGAAGACAATATTT
GCAATATTACATTCTACAGAGCAATGTATAAAATAACTACTGGCTTAAATCCCAAAAAGAAAATACCTGGTTGAAGTCACCAGTATGATAAAGCACTACT
GCCAAAAGGCTGTATGCTCCTGCTGTCATTCTGTGATAAGGACCACAAACAGCAACAAGTTTTGCAAGAGCCTGCATCACCATGTATAATCAACAGGATG
TAGTGGTCAAGAAATCATCATGATGTGTCAAGACACAAGATCAGGACTGTACCTTTGTGCCATAGTTAACAGCATCCTCAAGCTTTCCCTTGTCCAGGAA
AGTCTTGGATGACTCCAACAGGGTTCGACCGTCTGCTGATGAGCATGCAACATGCTGGAGTAAAGACATCATGGTTAAACATGTTAATAAACAGGAAGTA
TTTGCATCTCATTCAATTACAGAATCCAAAGGGTTAAACTTTACCTTGTAGATAGGAACAATGCTGATTATATCTGACCTTCTGAATGGATGTGGCATAT
CCATGTCATAATCTTTGGTAACTAGCTC