Detailed information on CNT0031947


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35132|UBC9_ARATH, E-value = 4e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0011416, E-value = 6e-08 (S. tuberosum)

Expression of CNT0031947

Peptides detected in this lncRNA

>peptide 1 (64 aa)
KFSIPKRITCIRPVLTPPLAHKNKPDPERKPSEGSLRPVSHPRPLVSAAKKRGISWHRSGSSRN*

>peptide 2 (80 aa)
MYSTRFDAPACAQKQAGPGAETERGLSPSSLPPPTSRVRCEEKGHIMASKRILKELKDLQKDPPTSCSAGMRKIYQWNHG*

Sequence

>CNT0031947
AAAATTTTCCATTCCTAAACGGATCACATGTATTCGACCCGTTTTGACGCCCCCGCTTGCGCACAAAAACAAGCCGGACCCGGAGCGGAAACCGAGCGAG
GGCTCTCTCCGTCCAGTCTCCCACCCCCGACCTCTCGTGTCCGCTGCGAAGAAAAGGGGCATATCATGGCATCGAAGCGGATCCTCAAGGAACTAAAGGA
CCTGCAGAAAGATCCTCCAACATCATGCAGTGCAGGTATGAGAAAGATTTATCAGTGGAACCATGGCTGATTGGCTGGTAGACAGTGTGAACTTGAACGT
TGATATGATAATGACTCTGTTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0819433-00 ncRNA CNT0031947 258 150 noncoding Trans
OS01T0819466-00 ncRNA CNT0031947 462 160 noncoding Cis