Detailed information on CNT0011416


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35135|UBC4_SOLLC, E-value = 9e-99

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0044717, E-value = 5e-08 (A. thaliana)
CNT0002933, E-value = 3e-37 (G. max)
CNT0021795, E-value = 2e-41 (A. trichopoda)
CNT0031947, E-value = 2e-07 (O. sativa)

Expression of CNT0011416

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MILLYLKLLTCTRLTGPNTKPLLVAGLRNTQWDDAQNCLQACLGLL*

>peptide 2 (30 aa)
MSVIYLLVMRHCIEGLLKSTFLLHKDRDKV*

>peptide 3 (62 aa)
EYFLYNTPISHFIILFFHFFQTTLLLAQKYPFPPLQSPSPSISTQANPPLSPVSSLSGTGAN*

>peptide 4 (175 aa)
MASKRILKELKDLQKDPPTSCSAGNLAELFIPLFNLLAFWSYVFLANGTIGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV
FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*

>peptide 5 (52 aa)
MLEVYFWFQFISLQIILLSLQRLPSELRFSIPTSIAMEVFVWIFLRSSGVQH*

Sequence

>CNT0011416
GAATACTTCCTTTATAACACTCCAATTTCCCATTTTATAATTCTCTTCTTCCATTTCTTCCAAACTACTCTGCTATTGGCTCAAAAATATCCTTTTCCAC
CTCTGCAATCTCCGTCTCCTTCAATTTCAACTCAAGCAAATCCACCTCTCTCACCAGTTTCATCACTTTCAGGTACGGGGGCTAATTGATGGCGTCGAAG
AGGATATTGAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCCACATCATGCAGTGCTGGTAATTTAGCTGAACTATTTATTCCATTGTTCAATTTATTGG
CTTTCTGGAGTTATGTTTTCTTAGCCAACGGAACTATAGGTCCAGTGGCAGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCC
TTATGCTGGAGGTGTATTTTTGGTTTCAATTCATTTCCCTCCAGATTATCCTTTTAAGCCTCCAAAGGTTGCCTTCAGAACTAAGGTTTTCCATCCCAAC
ATCAATAGCAATGGAAGTATTTGTCTGGATATTCTTAAGGAGCAGTGGAGTCCAGCATTAACCATATCCAAGGTCCTGCTGTCCATCTGCTCTCTGTTGA
CAGACCCAAACCCAGATGATCCTCTTGTACCTGAAATTGCTCACATGTACAAGACTGACAGGGCCAAATACGAAACCACTGCTCGTAGCTGGACTCAGAA
ATACGCAATGGGATGATGCACAAAATTGTCTCCAGGCATGTCTGGGACTTTTGTAACAGCAATGTCTTATTGTGCTTGGGGTGAATGAATAAATTCCGTG
AAAAGAACTTGGTTACTTCTTAATCTCCCTTCATGTGGGTTGTCAAGGGAACGGTGTTTTCAATTTGTGAATATCTATTTGATGACTAGTAAGGGAGAAA
CTGCAATGTACGTAATTCTACTTTGTTTGCCAGTTTGACATGCGCCTTTCCCCTAATTTGTCTGACAAATATGGTGAGATCTTTGAATTTTAGGGTTGAT
TCACAATTATCAACCTGAATTCTCATCTGGTACCATTGTTGAAAATGGAAATGGAGATAACAAGCAATTTTATTATTATGAGAATATGTTATGAGTGTTA
TATACCTTTTGGTCATGCGCCATTGTATTGAGGGTCTACTGAAATCAACTTTTCTATTGCACAAAGATAGGGATAAGGTATAGGGGCAAGATGTGCTTAG
ATCCTCT