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Detailed information on CNT0043452


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P48000|KNAT3_ARATH, E-value = 5e-53

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001697, E-value = 3e-11 (G. max)

Expression of CNT0043452

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCLHHKKNINQTHNKHKEQNLYFLHHHDHYYIISSFFGILV

>peptide 2 (29 aa)
SLISPLLCLLSSPCNPFHQQDKALYIVSS*

Sequence

>CNT0043452
TCCTTAATATCTCCTCTCTTATGTCTACTATCTTCTCCTTGTAACCCTTTTCATCAACAAGACAAAGCCCTCTACATTGTTAGTTCATGAACTAGTTCAA
AGAACAAGTTTGTTGATTATTACCTGTTTGAGTTCATGTTTAAGTTCTTGTCTAACTCTTTCCATCAACGACCTCTCACTCTCAGTAGGAATCAAAGGAC
CAAAACCCAACACATCTAATCCCCCATCGAACATATTAGCATCACTCTCTACTTGTTCATCTTCATCGTCAGACATTGTTGCTCCCATCCCTTCTCCAGG
AGACACTCCTAATCTCACCAATAAAACACAAAACTTGTCAATGTCATAAAACTAACTATTGGATTCATGAGCTAATCACAGGATTCATTTTCTCACCTGT
TAAGCTTTGAAGAGACTGCTCAATCTCCCAACAAGCCATCACAGCTTCCATTGCATGAACACGCACATGTTGTTGCAATTGCTCTTTAAATGAACACAGT
AGCAACACATAATGTGTCTACACCATAAAAAAAACATTAATCAAACACACAATAAACACAAAGAACAAAATTTGTATTTTCTTCATCATCATGACCATTA
TTATATCATAAGCTCTTTTTTTGGGATTTTAGTCT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT5G25220.1 KNOTTED1-like homeobox gene 3 protein coding CNT0043452 1730 635 CDS Cis
AT5G25220.2 KNOTTED1-like homeobox gene 3 protein coding CNT0043452 1730 635 CDS Cis