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Detailed information on CNT0006427


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q53YF3|SPC3B_ARATH, E-value = 1e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001141, E-value = 5e-12 (G. max)

Expression of CNT0006427

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.542.5721.6163.2052.3982.5342.6092.5211.892.204grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)00.20.40.60.811.21.41.61.822.22.42.62.833.23.4

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSLSSPSQGPILAYFMLVVRKRRLFFPTPSRKGKIYNLPQFSALLPPTICNKDAPVFAVT*

>peptide 2 (34 aa)
MSTYKGSFLCILSSYRMGIKQLHYKEISQNFQIG*

>peptide 3 (43 aa)
MPFCFLIMKVMICLSISSLHICFLPLILVIVSRGTTFGAENLT*

>peptide 4 (112 aa)
MHSYGYRANGVLSLSLTILALLCTVASLSGGILNLPPPSAQVEVVNINWFQKHRSGNDEVSLTLNISANLESLFTWNTKQIFVFLAAEYETPKNSLNQYL
KVPLELVQTSNH*

>peptide 5 (47 aa)
MVPGASNPYKNYESLLTKPGPNISILYVGRTEKEAFLSNPIKKRKNL*

>peptide 6 (34 aa)
MQQGCPSICRHLTPTSNTKPLSKFMHENVLEVSL*

Sequence

>CNT0006427
CGTGCCCTTAACGAGCAGAGCAAGTCCACCCGCCGCTTTGTCCCTTGTACAATTCGCCGTACCCGAAAGTGAGAAGAACTAAATTTCGAAAAAGAAATGC
ATTCGTACGGGTATAGAGCAAACGGTGTGCTCTCATTGTCATTGACTATTCTAGCCCTACTCTGCACTGTCGCCTCTCTCTCCGGCGGTATTCTCAATCT
CCCTCCTCCTTCCGCCCAAGTTGAGGTGGTAAACATCAATTGGTTTCAGAAGCACCGAAGTGGAAACGACGAGGTCAGCTTGACATTAAATATTTCAGCA
AATCTTGAGTCATTGTTTACTTGGAACACGAAACAGATATTTGTCTTCTTAGCAGCTGAGTATGAAACCCCAAAGAATTCGTTGAATCAGTACTTAAAAG
TTCCTCTTGAGCTAGTTCAAACTTCAAATCACTGATGGTATAAGTGAGATGGTTGTACTCTTAATGTCTAAGAAATTATATTAAGGTTTCTATTTGGGAT
GGTATTATACCATCCATAGAACAAGCAAAGTTCCGGATTAACACCATAAACAAGTACCGTCTTGCTGATCAGGTAAGGCTTCTCTTCAGTACAATTTCTG
CCACTAATGGTCCCAGGAGCATCAAACCCCTATAAAAATTATGAGTCTCTCCTCACCAAGCCAGGGCCCAATATTAGCATACTTTATGTTGGTCGTACGG
AAAAGGAGGCTTTTCTTTCCAACCCCATCAAGAAAAGGAAAAATTTATAATCTGCCGCAATTTTCTGCCCTCTTACCACCTACCATATGCAACAAGGATG
CCCCAGTATTTGCCGTCACCTAACACCCACGTCCAACACAAAACCTTTATCTAAATTTATGCATGAAAATGTTCTGGAGGTTTCACTGTAGATGCCTTTC
TGCTTCCTGATTATGAAGGTGATGATCTGTTTGTCAATCAGTTCACTGCATATTTGTTTTCTTCCACTCATCCTAGTCATCGTTTCCAGGGGAACAACCT
TCGGGGCAGAGAATTTAACTTGACATTGCATTGGCATGTCATGCCCAGGACAGGCAAAATGTTTGCCGATAAAATAGTTATGACAGGATATCGCATGCCC
CATGAGTACGTATAAAGGATCTTTTCTGTGTATTTTAAGTTCTTATAGGATGGGAATTAAACAATTACACTATAAAGAAATATCACAAAATTTTCAAATT
GGGTGAAAAGCTTATCAGGAAGAGACTTCCCTTGAGGTTATACGCTGGCCCACTCTTTCGTCTTAGCAATCAATTGCTACCTTCAAAAACGTTGTCACTT
CAACATTGACGCAAATTGTTTTGTACCTAATTTGCATCCTATTTTATATTTTGATCTCATCTATTTGTATTCTGATCATATATGTTTTGTATCTTTATTT
AACGATCTAGATTTCATAATATATGATCGAGATTGTATGTTTGATTGATGCAAATCAATACCCTAAAATTTTTCAAAAATAAAATAAAATACATCGCTCT
CACCAAACATGGTGGCTG