Detailed information on CNT0006427


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q53YF3|SPC3B_ARATH, E-value = 1e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0001141, E-value = 5e-12 (G. max)

Expression of CNT0006427

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSLSSPSQGPILAYFMLVVRKRRLFFPTPSRKGKIYNLPQFSALLPPTICNKDAPVFAVT*

>peptide 2 (34 aa)
MSTYKGSFLCILSSYRMGIKQLHYKEISQNFQIG*

>peptide 3 (43 aa)
MPFCFLIMKVMICLSISSLHICFLPLILVIVSRGTTFGAENLT*

>peptide 4 (112 aa)
MHSYGYRANGVLSLSLTILALLCTVASLSGGILNLPPPSAQVEVVNINWFQKHRSGNDEVSLTLNISANLESLFTWNTKQIFVFLAAEYETPKNSLNQYL
KVPLELVQTSNH*

>peptide 5 (47 aa)
MVPGASNPYKNYESLLTKPGPNISILYVGRTEKEAFLSNPIKKRKNL*

>peptide 6 (34 aa)
MQQGCPSICRHLTPTSNTKPLSKFMHENVLEVSL*

Sequence

>CNT0006427
CGTGCCCTTAACGAGCAGAGCAAGTCCACCCGCCGCTTTGTCCCTTGTACAATTCGCCGTACCCGAAAGTGAGAAGAACTAAATTTCGAAAAAGAAATGC
ATTCGTACGGGTATAGAGCAAACGGTGTGCTCTCATTGTCATTGACTATTCTAGCCCTACTCTGCACTGTCGCCTCTCTCTCCGGCGGTATTCTCAATCT
CCCTCCTCCTTCCGCCCAAGTTGAGGTGGTAAACATCAATTGGTTTCAGAAGCACCGAAGTGGAAACGACGAGGTCAGCTTGACATTAAATATTTCAGCA
AATCTTGAGTCATTGTTTACTTGGAACACGAAACAGATATTTGTCTTCTTAGCAGCTGAGTATGAAACCCCAAAGAATTCGTTGAATCAGTACTTAAAAG
TTCCTCTTGAGCTAGTTCAAACTTCAAATCACTGATGGTATAAGTGAGATGGTTGTACTCTTAATGTCTAAGAAATTATATTAAGGTTTCTATTTGGGAT
GGTATTATACCATCCATAGAACAAGCAAAGTTCCGGATTAACACCATAAACAAGTACCGTCTTGCTGATCAGGTAAGGCTTCTCTTCAGTACAATTTCTG
CCACTAATGGTCCCAGGAGCATCAAACCCCTATAAAAATTATGAGTCTCTCCTCACCAAGCCAGGGCCCAATATTAGCATACTTTATGTTGGTCGTACGG
AAAAGGAGGCTTTTCTTTCCAACCCCATCAAGAAAAGGAAAAATTTATAATCTGCCGCAATTTTCTGCCCTCTTACCACCTACCATATGCAACAAGGATG
CCCCAGTATTTGCCGTCACCTAACACCCACGTCCAACACAAAACCTTTATCTAAATTTATGCATGAAAATGTTCTGGAGGTTTCACTGTAGATGCCTTTC
TGCTTCCTGATTATGAAGGTGATGATCTGTTTGTCAATCAGTTCACTGCATATTTGTTTTCTTCCACTCATCCTAGTCATCGTTTCCAGGGGAACAACCT
TCGGGGCAGAGAATTTAACTTGACATTGCATTGGCATGTCATGCCCAGGACAGGCAAAATGTTTGCCGATAAAATAGTTATGACAGGATATCGCATGCCC
CATGAGTACGTATAAAGGATCTTTTCTGTGTATTTTAAGTTCTTATAGGATGGGAATTAAACAATTACACTATAAAGAAATATCACAAAATTTTCAAATT
GGGTGAAAAGCTTATCAGGAAGAGACTTCCCTTGAGGTTATACGCTGGCCCACTCTTTCGTCTTAGCAATCAATTGCTACCTTCAAAAACGTTGTCACTT
CAACATTGACGCAAATTGTTTTGTACCTAATTTGCATCCTATTTTATATTTTGATCTCATCTATTTGTATTCTGATCATATATGTTTTGTATCTTTATTT
AACGATCTAGATTTCATAATATATGATCGAGATTGTATGTTTGATTGATGCAAATCAATACCCTAAAATTTTTCAAAAATAAAATAAAATACATCGCTCT
CACCAAACATGGTGGCTG