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Detailed information on CNT0000685


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004708, E-value = 5e-09 (V. vinifera)
CNT0042987, E-value = 4e-06 (A. thaliana)

Expression of CNT0000685

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.1792.2542.0294.54900.3690.2410.0880.30300.104leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.755

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDNNIKLACYTMMIIMLAARFKSSLNVNLV*

>peptide 2 (38 aa)
MSERSYNHSLYTDESMKTVWESCFGPFDLEISISYFHS*

>peptide 3 (49 aa)
MTIKMIFVDFNSVHIDHVLFHSNHVLTLSISQKCFHRIPSSLGKWFKLS*

>peptide 4 (44 aa)
SSLGLILKLTMGSKSGLDKLTVRFLISNKTCKRTPNIQKSVTKN*

Sequence

>CNT0000685
GGTCATCATTGGGATTGATATTGAAACTTACAATGGGTTCGAAGTCAGGGCTAGACAAGTTGACAGTGAGGTTTCTCATTAGCAACAAAACCTGCAAAAG
AACACCAAATATACAAAAGTCAGTAACCAAGAACTAAAAAAAAAGTTTGTATTTGTCTCCCCCTTCAAACAGATTGTTTTACTCATTAGTTTTTTATTTC
TTTTTTCTTGGGCTCATTTAGCTTTTCTAGTACACGCAGAAAAGATGGGAGATAAGGGAATTTGAGCTCCAGAAGAATAGGGCTATTATATGAGTGAAAG
AAGTTATAACCACTCCCTTTATACAGACGAAAGTATGAAGACAGTTTGGGAAAGTTGTTTTGGGCCTTTTGACCTTGAAATAAGTATCTCATATTTTCAT
TCATAAACCATTCCGGGCATATAACAGAAGTGATGGACAACAATATAAAGCTTGCATGTTATACTATGATGATTATTATGTTGGCAGCGAGATTTAAAAG
CTCATTAAATGTCAATTTGGTATAACAGTTTTTCTAATTAGATGCACAACAGTTATCCTTTAGAGTAATATAATATATAGCTTTAACAAACTTTTCACAG
AGATTTCCAATTGAGTAAAATTAGCAGCCACACATCGGTGTTTCCCAAGAGAATTTGATTAGCATATGCCATCTCACCCACTTACCTTATCTTGCTTCAA
CAAACTAGTGTAAAAACTACAAAGGAACAGAGCAACCTCTTATATTTCACTACAGATTGAAGTGATAAAAAGTAGAATGTTCCTTACTCCACAACGAAAA
GGGATCATAAAAGGCAACCAGAGCATTACTATGCCATTAATGTAATTTGGAAGTTTATATTGACCGTTTCATTATGGGAACCTATGTATACTTGATGACA
ATAACCTGTCTAGTTCATTCAGAATTCAAGAAATGATAGATGTCATGGATTAATTCTCTCAAAAGCATAAGCTATTAGGTGAAAATACATGAATAGTTTT
ATGTTGTCTCTCTAGTAAACTCCCTCATGTAAGAGTTCTTGGGCTTAAAGCATTAGTAATGTATAAGCTCACCTACCTTATTTTGAAATTCAATTTTTTG
TTAGAAGAATGAGGGTGGAAAGGTCCAAATTTTAAACCATTTAGACATATAAGTTTTGATACCATGTTATGAAGCAACTATCCCAAAACTAACATTGAGA
GGTGAAGGCATATGAATGATTTTATACTCTCTTACAGTAAATTTCAATTTATAGGAAAATTTCACTATGCCTTTGTTAGAGGACACATCTAAGACCGACT
AATTCCAGCAACAAGGTTCGTAGTCTGAATCTAAACTCAAATGAACAGATGGAAAACAGATGACAATCAAAATGATTTTTGTTGATTTCAATTCTGTCCA
CATTGATCATGTCCTTTTCCATTCAAATCATGTTTTGACACTCTCAATCAGTCAAAAATGTTTTCATAGGATTCCTTCTTCCCTTGGAAAATGGTTTAAG
TTATCCTGAGTCAACAGGATCAACACACTTCCAGTAGAGTAGTCAAACAGAAAGGCTATATCATTTTATATTCTCAAAT

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G03370.2 Uncharacterized protein protein coding CNT0000685 105 252 UTR5 Trans
GLYMA10G05560.1 Uncharacterized protein protein coding CNT0000685 334 133 CDS Trans
GLYMA10G05560.2 Uncharacterized protein protein coding CNT0000685 334 133 CDS Trans
GLYMA13G19910.1 Uncharacterized protein protein coding CNT0000685 924 341 CDS Cis
GLYMA13G19910.2 Uncharacterized protein protein coding CNT0000685 924 341 CDS Cis
GLYMA13G19910.3 Uncharacterized protein protein coding CNT0000685 924 341 CDS Cis
GLYMA17G34640.1 Uncharacterized protein protein coding CNT0000685 150 225 UTR3 Trans
GLYMA19G36170.1 Uncharacterized protein protein coding CNT0000685 203 96 CDS Trans