Detailed information on CNT0004708


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000685, E-value = 7e-09 (G. max)
CNT0028376, E-value = 9e-30 (O. sativa)
CNT0016531, E-value = 5e-22 (S. tuberosum)

Expression of CNT0004708

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4280.3220.2660.130.7290.7960.6260.9360.6051.075grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.9511.051.11.…1.15

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKGITLTIGSKSGLDKLIVRFLINNNTYKSST*

>peptide 2 (63 aa)
GQKKQADVAHQFSKINQCFAPSQDFQHQPQRICYWHHMMTGPLSVPINQVVYHSMHRSFTTFT*

>peptide 3 (55 aa)
MIQVGNTYHFTSQTHEKYKNYTPPKRSRVHEISNECQADQLMRNKQRSRVHENIK*

>peptide 4 (44 aa)
MKSIQLLFIVDVHWTLNFESSIYFQLIFRALSLSHLLESTKPMS*

>peptide 5 (29 aa)
MSPSQGQVLTRYSPVCHWKHHLCHNQLRI*

>peptide 6 (55 aa)
AKETGRCCSPVQQDKSVLCTFPGLPASTPTDLLLASYDDRTSLCTNQPSCLPLNA*

>peptide 7 (44 aa)
MKIDPLSLSTAEERVCFALIEYIRLEEKRTLTHALINLYALLNS*

Sequence

>CNT0004708
GGGCAAAAGAAACAGGCAGATGTTGCTCACCAGTTCAGCAAGATAAATCAGTGCTTTGCACCTTCCCAGGACTTCCAGCATCAACCCCAACGGATTTGCT
ATTGGCATCATATGATGACAGGACCTCTCTCTGTACCAATCAACCAAGTTGTCTACCACTCAATGCATAGATCATTCACAACTTTCACATAAGTTCTGAT
ATGGAAAAGAATTATCTGATGCTTGCATAAGAAATGCCTCTTCAGCATGCGTAAATAGTAATGCTTGCAGATATAGAGTACAAATGCAAATTTTCTTTCA
TGAACTAAGATAATCATCAAATGTGAACAATTGCAGCTTAGACAAATTCACATGAAATGAAGGGTATAACACTCACAATTGGCTCAAAATCAGGGCTAGA
CAAGTTGATAGTGAGGTTTCTCATCAACAATAATACCTACAAAAGTTCCACATAGACTCATTAGCATTCTTCTGACAAGAAATATCCTTCATAGTAAGAG
AATCATTAATCAAATTCATATGATTCAAGTGGGTAACACATACCACTTCACTAGCCAAACCCATGAAAAATACAAAAACTATACACCACCGAAAAGGTCA
AGAGTTCATGAAATATCAAATGAATGTCAGGCTGATCAACTAATGAGGAACAAGCAAAGGTCAAGAGTTCATGAAAACATCAAATGATTATCAGGCCTAA
CAAATAATGAGGAACACACATCTCAAAGTTTTACACTAAAACCACTTCATTGTGAACAAAAGAAGAATGCCATAGCTAACTACAGTTTTAAATCTTACAA
TGATGTCGACACTACAGTTAAATCTTCCATAGCAAATTTACAGAGTCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGATCATCGTGTAGGTAAG
CTATTGCCTCACCAACTAGCTAATCAGACACAAACCCCTCCTCAGGTGGATTCCTCCTTTTGCTCCTCAGCCTATGGAGTATTAGCAGCCATTTCCAGCT
GATGTCCCCCTCCCAGGGGCAGGTTCTTACGCGTTACTCACCCGTCTGCCACTGGAAACACCACTTATGTCATAACCAACTAAGAATATAAGCAATCAAA
TCATTACAAACAACAGGCCCAACCTCAGCAACCACGGTCCACTTTGACATCACAATGTTGCCAAAGCTATGATTAACTTGAACTAGTTCTCAAAGGGCCA
AGTTCCATACAGCTTACTCACAAGCAAGTTCCATATAAACCAAGTCCAATCTAAATCAGCAGCTTCAAACAAGGCTGCTGAATAGGAAGCTGGTATAGCT
TTGGAGATGAAGATTGATCCTCTAAGTCTCTCTACAGCTGAAGAAAGAGTGTGTTTTGCTCTAATAGAATATATTCGATTGGAAGAGAAGCGCACGTTGA
CTCATGCACTCATAAACTTATATGCACTCCTAAACTCCTGAAATCAGGAACTGGTTTGAAGGTGTCACTCATGAGCTATCTTATTAAAGGAATTCCAACT
GCCGGGAACAGGCGAGAAAATAGAAGTGTGCCTTTTAATTAAACTGCCGGGGCAGGCTTTTCATTATAATTCTTTCTGGATGAGTTATCAACAAGCATAC
AACTATCTTAAGTTGTTTCCACAGTAAAGATCAGTACGTCTTGGTGCAGAAAATTTCCTTGCTCTGTTCATACTTCACAATGTTTGACTTCTTATATAAG
CAATCTTTACATTTTAAATGTTTTTTCAGAATCAAGCTCTTAATTATTTGATAAACTAAAGTCACTTTCTCTTCAGGCCAAATTCAGTTTAATTGGTGAA
CTTTCACTTTCCAGGAACTTGCTGTATGCATGAAAAGCATACAGTTGCTATTTATTGTAGATGTGCACTGGACTCTCAATTTTGAAAGCTCCATATATTT
TCAGCTTATTTTCAGGGCTTTATCATTGAGCCATCTGCTAGAATCAACCAAGCCTATGTCATAAAACTTGTCATAACAGATTTGAGTCAGAGCCACTAAC
CCCAACCCAAACCATAGGTTACTTGGTCTGTCAATTGAGTATGATCATATTTATATCCAATGCAAAAATTTTAAGGTCAGCAGTTTGATAGTGTCATTTG
TGTGTGACCTTGTTGCATAGAACAAAAATAAGCAGCCCTAGCCCATCTCAATATCAACTTCATAACAAGCCCAAAAGCTGGTCAAAACTCAACTCAACTT
GGTTTCTTTACAGCCTTAAGCAGAGGATATTGAGCTCCTCCACAACATAATACAATGCAGTGCATGTTAAACAGAAAAGGGCAAACTGTTTTATTTGGAA
TATTTTTCTAGTGGAAAAATTATATAGCCACTGGTTTTTTTTTTCCTTTTTGTCCCTATTGGGACTTGACC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_08s0040g03220.t01 Putative uncharacterized protein protein coding CNT0004708 1880 686 CDS_UTR Cis