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Detailed information on CNT0007250


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q49KT9|YCF68_EUCGG, E-value = 6e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0028376, E-value = 1e-69 (O. sativa)

Expression of CNT0007250

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.4753.682.61100.6171.0421.0540.8270.1940.971grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MIHISGSGADEHIELFMWLRALTAQAQQRNYQAFHATGKFEETLKASLIVLVSKRGGRELGFQILSIW*

>peptide 2 (29 aa)
DTAYPSDFMGQLVPLRTARISRVNRKLDL*

>peptide 3 (36 aa)
MILVTVHLWVILCVFVCVWPRRVTINNVVSSFVIFI*

>peptide 4 (33 aa)
MIILSSNVPWSVRYDLSYCTSLGDFVCFCVCVA*

Sequence

>CNT0007250
TGATACTGCTTATCCTAGTGATTTTATGGGCCAACTGGTCCCCCTCCGGACGGCCCGAATCTCACGAGTGAATAGAAAGTTAGATCTGTGATGGATCTCA
CCTGAATCGCCCCATCTATCCTCTTGAAGAGAAATTTGGTTTTAAACCCTGGTTCCAACAGGAGGAGTACACCATGCTAATGTGACTTGGATGATCCACA
TCTCAGGGTCGGGCGCTGATGAGCACATTGAACTATTCATGTGGCTGAGAGCCCTAACAGCCCAGGCACAACAACGCAATTATCAAGCTTTTCATGCGAC
TGGCAAGTTTGAGGAAACTCTGAAAGCTTCTCTCATTGTTCTGGTTTCTAAGAGGGGAGGGAGAGAGTTAGGATTCCAGATCTTATCAATTTGGTGAATG
GTACTCAAAAAGTAATCTAGTTGGTACCAGAGAGAAAATAAGGTGCCTCTCTCATGATTTAAAAGCGTTTGGGAGGTTTTGGCAAGACCACTCTTGTTAA
GAATCATTCCAATTTGGTGTTAAATATGTAAAAGGGATAACAACACTCTGGATGATCATCTTGTCATCCAATGTCCCTTGGTCTGTGAGGTATGATCTTA
GTTACTGTACATCTTTGGGTGATTTTGTGTGTTTTTGTGTGTGTGTGGCCTAGGAGAGTTACAATCAATAATGTTGTATCATCTTTTGTAATATTCATTT
AGATTGCAGGTTCATCAGGTATTTTAAGTAATTTTGTT