Detailed information on CNT0028376


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0C305|YCF68_ORYSI, E-value = 1e-58

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs
:
CNT0001676 in G. max

Most similar lncRNAs
:
CNT0007250, E-value = 4e-69 (V. vinifera)
CNT0001676, E-value = 6e-93 (G. max)
CNT0008455, E-value = 9e-58 (S. tuberosum)

Expression of CNT0028376

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSLVLLHPKRKKTSISKFSSDVAAFFLGVKQCQTKIPNKHKH*

>peptide 2 (43 aa)
MASPWEITPMGRKRKALRDPPGPTLDTLRSFFKPALLPFRVKR*

>peptide 3 (40 aa)
MDSREERSRSAPPPRTARIPRVNRKLDLHGISPESPHLSS*

>peptide 4 (58 aa)
MFQSSSPLLRKSEPPVQVQDTTITAWTIRQPTRNRNDPIARAELYQLSYIPPSQVEYA*

>peptide 5 (47 aa)
MTSNMASSYSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN*

>peptide 6 (51 aa)
NEGLPFSDPYCPTGERTANVFHLLNRVYGRSVTPGRRRRPWGDLVVPTGWR*

>peptide 7 (74 aa)
MGSHLNRPIYPPEEKFVWFQTPIQTGGVRHANVPWMIHIFGSGADEHIELSMWLRALTAQAQRRNYQGRALPLS*

>peptide 8 (69 aa)
MHHLCPGSRGHPSLSRGFAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIIFSDQLLIIALVSYCLTN*

Sequence

>CNT0028376
AACGAGGGATTGCCCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACGGCTAATGTGTTCCACTTATTGAACAGGGTCTATGGTCGGTCCGTGACCC
CTGGACGCCGAAGGCGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGATAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCACATTTCGCT
CAAAGGGTTGAAGGGAGATAGTGCATCAAGCTATTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAAGCCTAGGAGAGCCGCCG
ACTCCAACTATCGTCCATGTACGATCCATACTAGATCTGACCAACTGCCCATCCTACCTCCTCTACCTTTTTGACAGCCCATCTTTTTGTCTCAGTAGAG
TCTTTCAGTGGCATGTTTCAGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTACCATTACCGCCTGGACAATTAGAC
AGCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGAGTATGCATGAAAGAGTCAGAT
GCTTCTTCTATTCTTTTCCCTGGCACAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCTGTGAAGTAAATCATCGCCCCTACGATCCAACCAATT
GGGAGAGAATCAATAGACTCCTTTTCGGGAGCGATTCATCCTTCCCGAACGCAGCATACAACTCTCCGTTGTACTGCGCTCTTCAAGTGTGCTTCTTCCC
CTTCTCCCCCTTACCATGGCAAGTCCTTGGGAAATAACTCCGATGGGCAGAAAAAGGAAGGCGTTAAGAGACCCTCCTGGCCCAACTCTAGACACTCTAA
GATCCTTTTTCAAACCTGCTCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGCCACATCCCATTGCACTGATCGAGGGCGCTCGTAGTGACTTAGGG
AGTCGAAGACCAAGAAGTGGCTTATTTATACCAAGCATTCCTCTTATGGCTAGATCCAACCTCCTAGTCCCTGCGGAAAGGAAAAAGAATTTCACGTTCT
TCCTTTCAGGAAGGGAGGATTAGGGAAGTCCTATTGATTGCTGCTTTCTCCAGACCGCCGGGAAAAGCATGAAAAAAAGGCTCGAACAGTACGATCCCTC
CGTCACCCCAGAATGAAAGGGTGATCTCGTAGTTCTTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCATTGAGGACGAACCTCAACCTGTGC
TCGAGAGATAGCTCTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGTAGTGCCCCCCCCCCCCGGACCGCCCGGATCCCACGAG
TGAATAGAAAGTTAGATCTACATGGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGTTTGGTTTCAAACTCCGATTCAAACAGGAG
GAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTTCGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCA
GGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCATCGCGCGGGCCTCCCAAAGGGAGGCCTGCTACGCCAAAAGCGAGAAA
AACTCCATCCCTTTCCTTTTGACATCCCCATGCCGCCACACCACACGGGGGGGGCATGGGGACGTCAAAAAGGGGATCCTATCACTATCAACTAATTTGT
TCCGACCTAGGATAATAAACTCATGAGCTTGGTCTTACTTCACCCTAAACGAAAGAAGACTTCCATATCCAAGTTTAGCTCAGACGTAGCTGCCTTCTTT
TTGGGCGTGAAGCAGTGTCAAACCAAAATACCCAATAAGCATAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACC
TTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCATCCCCCTCCTTACGGTTAAGGGTAATGACTTCAAACATGGCCAGCTCCTATAGTGTGAC
GGGCGGTGTGTACAAGGCCCGGGAACGGATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCTGCTTCATGCAGGCGAGTTGCAGCCTGCAAT
CCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGC
ATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTTAACACCGGCGGTCTGTTCAGGGTTCCAAACTCATAGTGGCAACTAAACACGAGGGTTGCGCTC
GTTGCGAGACTTAACCCAACACCTTACGGCACGAGCTGACGACAGCCATGCACCACCTGTGTCCGGGTTCCCGAGGGCACCCCTCTCTTTCAAGAGGATT
CGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATC
ATCTTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGGCGGATTCTTACGCGTT
ACTCACCCGTTCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGAT