Detailed information on CNT0000099 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q949R9|MPC1_ARATH, E-value = 4e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0023992, E-value = 3e-08 (A. trichopoda)

Expression of CNT0000099

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2350.5651.1551.0271.34321.6463.964.3338.04611.9511.9996.1163.20701.302leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSPMRQCNCINSQDGSELKGALSRTKRMQMQMQSKTYLFEH*

>peptide 2 (51 aa)
MNILRSFWNSPTGLKTTHFWGPAFNWSLPFAAAMDTKKPPETISVNMTGVQ*

>peptide 3 (59 aa)
MCVYSALCMRFAWMVRPRNPHLLVCHVSNETVQLYQLSRWFRAQRGLEQNKKDADADAE*

>peptide 4 (30 aa)
MSSSFKNKSFNYDLSFTIDCFNLLCYFSTL*

Sequence

>CNT0000099
CCAATTACTACCACCAAAGGATAATTTTGTAACTTTCACTCGAAGTGGCCAGAACCATAGCTGCTTCTCTAAGATAAAGAACATCTGATGCTATTGAATT
GATCTCCCAAATCCTAATTTGCAGGCCACAAAATACAGAAAATAGTTCACATCAAGATGAACATCCTACGCTCTTTTTGGAACAGTCCCACTGGCCTCAA
AACAACTCATTTTTGGGGTCCTGCCTTCAACTGGAGCCTTCCTTTTGCGGCAGCAATGGACACAAAGAAACCACCGGAAACAATATCTGTCAATATGACC
GGAGTGCAGTGATGTGTGTTTATTCGGCACTGTGCATGAGGTTTGCTTGGATGGTACGTCCAAGAAACCCACATCTTCTTGTATGCCATGTCTCCAATGA
GACAGTGCAATTGTATCAACTCTCAAGATGGTTCAGAGCTCAAAGGGGCCTTGAGCAGAACAAAAAGGATGCAGATGCAGATGCAGAGTAAAACTTATTT
ATTTGAACATTGAAGCTCAAAGAAAATGTCTTCTAGCTTTAAAAACAAGTCTTTTAATTATGACTTGTCATTTACTATTGATTGTTTTAATTTGCTTTGC
TATTTCAGCACATTATAGCTTTTTATAATAATG