Detailed information on CNT0000104 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005198, E-value = 4e-13 (V. vinifera)
CNT0043916, E-value = 1e-16 (A. thaliana)
CNT0017651, E-value = 2e-18 (Z. mays)
CNT0024039, E-value = 1e-10 (A. trichopoda)
CNT0030374, E-value = 5e-19 (O. sativa)
CNT0016055, E-value = 2e-06 (S. tuberosum)

Expression of CNT0000104

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSFATYKRKKNMIKMTENERKKSYLLLILHLPLHIHSTKQQFIF*

Sequence

>CNT0000104
CTTGTCCATGTACGCGCCGAATCCCCAAAACATAAAAGACAATTGCAGATCAATATGCAGCGAGTGTAACAGAGCATGAAAAATTTGAAAAAAAATTAAA
TTCAAGTGAAAAATGAGAGGAACACTAAGGTCTTAAAATCCTGTGGTTGCCCTGACCTACTCATGGTGGAGAGAAAGGATCACAAAAGAGATAATGTCAT
GTATTTATGTCATTTGCAACATATAAAAGGAAGAAAAACATGATAAAAATGACAGAAAATGAAAGAAAAAAGAGTTATCTTTTACTTATATTGCACCTCC
CGTTGCACATTCACTCAACAAAGCAACAATTTATTTTCTGATTAGAAAATAAACTAAGAAATTATAGAAGAATAAAGACTACATAATAATAATAATTTTT
TTTATCGGCACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATAACAAACTTATAAGCAGTGTAAATTAAATGCCAGTAAGATAACAACATACTGTAGCTGATACTTTTCCAGAATTAAC

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G35490.1 Uncharacterized protein protein coding CNT0000104 172 197 CDS_UTR Trans
GLYMA06G38212.1 Uncharacterized protein protein coding CNT0000104 377 204 CDS Trans
GLYMA06G38212.1 Uncharacterized protein protein coding CNT0000104 245 180 CDS Trans
GLYMA09G35780.1 Uncharacterized protein protein coding CNT0000104 235 121 CDS Trans
GLYMA12G01980.3 Uncharacterized protein protein coding CNT0000104 246 118 CDS Trans
GLYMA12G01980.4 Uncharacterized protein protein coding CNT0000104 246 118 CDS Trans
GLYMA15G37621.1 Uncharacterized protein protein coding CNT0000104 229 215 UTR3 Trans
GLYMA15G37621.1 Uncharacterized protein protein coding CNT0000104 155 112 CDS_UTR Trans
GLYMA16G22474.1 Uncharacterized protein protein coding CNT0000104 173 109 UTR5 Trans
GLYMA16G22474.1 Uncharacterized protein protein coding CNT0000104 113 97 UTR5 Trans
GLYMA16G22474.1 Uncharacterized protein protein coding CNT0000104 678 277 UTR5 Cis
GLYMA19G38130.1 Uncharacterized protein protein coding CNT0000104 174 163 CDS_UTR Trans