Detailed information on CNT0000273 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FF10|HPSE1_ARATH, E-value = 1e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0011077, E-value = 9e-06 (S. tuberosum)

Expression of CNT0000273

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.520.9150.623000000.18600000.5210.843leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.6

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFRGIVWQQILFPYNVERSTIVMSILKGRF*

>peptide 2 (35 aa)
ANVFAKSIDLLALARFRHRPVCLPSWCLIYLFLCR*

Sequence

>CNT0000273
TGCTAATGTCTTTGCAAAATCAATAGATCTATTAGCACTTGCACGGTTTCGGCATCGGCCTGTTTGCTTGCCTAGCTGGTGCCTCATATATTTGTTTTTG
TGTCGTTGAAGATAACTGCATAAATGTTTCGTGGCATCGTTTGGCAGCAGATTCTTTTTCCCTATAACGTTGAACGCTCTACGATAGTGATGAGCATCTT
GAAAGGAAGATTCTAGATCCTGAGCGCTTGAGCAGGGTGGAATCAATTTTCGGCAATCTTTCAGAAACCATTAAAATATATGGTCCTTGGTCTTCTGCAT
GGGTAGGAGAAGCTGGAGGGGCATACAACAGTGGTGGCAATCATGTTTCTAACAGATTTCTAAACAGCTTTTGTGCAGTTTTGTGGCATCGGTTAATGGG
AAAGAAGGTTCTTACGGTCTCCAGTGATGTTCATATTAAAGACTTTTACCTACAGTTAGGAAATGTAAGTAGAAGTTAATGACTTTTACCTACAATTGAA
AATGATAGATACATATTAAAAACTTTTTACCTACAGTTAGGAAATGTAAGTAGAAGTTAATGACTTTTACCTACACATTATACATAGTAGGTAAAACCTA
TAGTGACAGACAATTAGCCGTCACTATACCCCCCCCTCAAAGTTGACAGAGAAAACGTCCGTAGGACAAAGTCTATCATACATTTACTTACGGATTTTTT
ATTTATAGTGACAGTTTTTATGCGTAGGTATATGTCATTTTTCTTGTAGTGTGCTAGTAGTAGTAGTTATGAGAGATTCTCA