Detailed information on CNT0000479 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0022403, E-value = 3e-13 (A. trichopoda)

Expression of CNT0000479

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.5595.4435.0154.3771.1663.1972.8151.8573.9214.2684.6433.7262.0563.9664.687leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LHLILCEYQNQNLTLLAYCHKRRSNKEASQVVC*

>peptide 2 (38 aa)
FILYYASTKIKTLPYSRIAINDGRIKKRVKWCVELSVR*

>peptide 3 (77 aa)
MAQSCNQGLLLWNESRLQWVGSGKSRKHGQQKREPRLNWNATYESLLGTRQPFPKPIPLSEMVEFLVDVWEREGMYG*

>peptide 4 (36 aa)
MQKLLLFKAVTMHLYESGPCLDCHFLGSLHDVAGGS*

>peptide 5 (40 aa)
MQLMKVCLELDNLSPSPYLYLKWLNSWWMFGSVKGCMVET*

>peptide 6 (47 aa)
MVSGVQALVIWITATFNLREVSRLSVHQIKFSIIAVELLPQGPILNL*

>peptide 7 (43 aa)
MMYLTPERFSCIVVQRRLKDQTQVCSPFVISNTKGNPFVFALL*

>peptide 8 (37 aa)
MSQVLVWTVTSSDLSMMWLEVVRHLFFLLNMFSVLTL*

Sequence

>CNT0000479
CTTCATCTTATATTATGCGAGTACCAAAATCAAAACCTTACCTTACTCGCGTATTGCCATAAACGACGGTCGAATAAAGAAGCGAGTCAAGTGGTGTGTT
GAGTTAAGCGTCCGTTAAACGACAGACAGCGACAGTAGTGCAGCAGACACGATAAAAATAAAAAAAGCTCCAAAATTCTATGTGGTGGTGGAGATGGTGA
TGATTACTGCTTGGATCACTGACCTTTTCGCTTGTATGGGAACAGTGGTTGTTTTGGATGCTGTGTGAAACCCACACCAATTATTGCCGTGGATGAGCCA
GCAAAGGGACTAAGAATTCAGGGGCAGACAGTAAGAAAACCACACATATCAGATGGTTTCTGGAGTTCAAGCACTTGTGATCTGGATAACAGCAACATTC
AATCTCAGAGAAGTATCTCGTCTGTCAGTACATCAAATCAAATTCTCTATCATAGCGGTGGAACTTCTACCCCAGGGGCCAATCCTGAATTTGTAAACCC
AGGCAAGTTCTATATTGGTTTTTGCTATTCTTCCTATTAATTAATATTGGAATGTTCATCTATACTTTTAGCAAATCATAAGTTTGTTTGTTTGTTTTTT
CTTTTTTGGGTAATATAACAATGCCCCCAAAGGGAGCTTGATAGGGAAGGGAAAGTTGACAAGTGGGGGATTAAACTCCATCCCATATGGCCCAATCATG
TAACCAAGGCCTTCTTCTCTGGAATGAGAGCAGGCTTCAGTGGGTTGGAAGTGGCAAATCTAGGAAGCATGGCCAACAAAAAAGAGAACCCAGACTAAAT
TGGAATGCAACTTATGAAAGTTTGCTTGGAACTAGACAACCTTTCCCCAAGCCCATACCTTTATCTGAAATGGTTGAATTCCTGGTGGATGTTTGGGAGC
GTGAAGGGATGTATGGTTGAAACTTGATAGGTTAAAATGCTGAGTGCCTTCAAGTTTGTTTATACTTTCAATGATGTATTTGACTCCTGAAAGGTTTTCA
TGTATAGTTGTGCAGAGAAGATTAAAAGATCAAACACAAGTTTGTTCTCCCTTTGTAATTTCAAACACTAAAGGCAATCCTTTTGTTTTTGCCCTCCTGT
AAATGACTGTATATCATTTTCAAACTATAATCTGAATTGCTGAATGCAGAAGTTGTTACTTTTTAAGGCTGTAACTATGCATTTATATGAGTCAGGTCCT
TGTCTGGACTGTCACTTCCTCGGATCTCTCCATGATGTGGCTGGAGGTAGTTAGGCATCTATTCTTCCTATTGAATATGTTTTCAGTGCTAACTCTTTAG
AGTTGCCCGTTCTTGATTCATTTTCCATTTACTCCT