Detailed information on CNT0000532 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FF10|HPSE1_ARATH, E-value = 3e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022093, E-value = 3e-09 (A. trichopoda)

Expression of CNT0000532

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1532.4840.88300.3850.4841.1350.4730.5271.6871.6050.250.8650.7380.597leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRKYERVASGERGFALRFFVAHILFYYFC*

>peptide 2 (29 aa)
MKRWDELNQFFYETGRSWRGIQQWWQSCF*

Sequence

>CNT0000532
TGAGAAGAGAGCATCGCCTTCAAGTCACTCTCCTATCTCTCCTCCCCCATCCAAGAATGAAAGCTGAAGTGATTGAAGAAAGCAAATAGGGTTCCCGAAC
CTTCTCACCCTCCTATCTCTCCTCCCAATTTTTCCCCACAGTAGTTGATGAAGTGAATTTCTTTCACGAGGAGAATAGTGGAATACCCTATGAGAAAATA
CGAGAGGGTTGCTAGTGGTGAAAGAGGATTTGCTCTTCGTTTCTTCGTTGCACACATTCTCTTTTACTATTTCTGCTGAAATTGCACATTTCTTTTGCTT
CAGCTTTTGTGAGAAGGCTGCTAGTGGTGAGAGAGGATTTGTTCTTGGAAGATGTTGGCGATTTGCCGAAGTCCGAATACGTGGAATGCGCGAGTAATGT
GGATGATGAAAAATCTACTGTTCCGTTAGGGATTGGATTTTCGGACATGGCTTTTGAGAATTGTGGTATGTAAACATGACCCAAGATATATACCATATTC
CTTAATCAAGCCCTTTGGCACAGGAGATAGGCGCTTAGAGGACTTGTCTCATCCTTTCCTTGCCAAGGCAATCCAAGGTATGTATATCTGCATTACTTCT
ATATAAAGTTACTCTGATGACATTCTATTGTACATCACTTCCGAGTAACTGATTAAGAAAATCAGTTACTTTGATGACATTCTGTTGTTTGTGACTGCAT
AAAGTTATAATGTATTTTATGAATATCTTCTTTGGAATAATTATGTTTAGCATGATGTTATTTGTTTCATAATTGTTGCACGATAGCCCTCAGGCCATTG
AGGATAAGACTTGGAGGTTCTTTGCAAGACCAGGTTCTGTATGATGTGGGAAGTTTGAAGTCTCCTTGCCATTCCCTTCAAAAGGTTAAAGGTGGATTGT
TTGGATTTTCAAAGGGATGTTTACACATGAAAAGGTGGGATGAGCTGAATCAGTTTTTCTACGAGACAGGGAGAAGCTGGAGAGGCATACAACAGTGGTG
GCAATCATGTTTCTAACAGATTTTTAAACAGCTTTTGGTGGATAAAATTGGTTGTCCAATCCTTCCATCATTTTTTTGTTCTTTTTTAATTTCTAAAGGA
TGGA