Detailed information on CNT0000616 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0009236, E-value = 3e-07 (S. tuberosum)

Expression of CNT0000616

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000.521000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.55

Peptides detected in this lncRNA

>peptide 1 (36 aa)
WDIVFILCLMLCQWKDFQSWTALQKYHLVLTCGILS*

>peptide 2 (106 aa)
MGYRVHFVSHVVSVEGFPVLDCSSEVSFGFDMWHFELITGLVVLISSCRYLLLKTWPDFAESSEAAKQPISRSLAHFSLWIILLLHFCLVLVRNYFSEER
FFHFWE*

>peptide 3 (44 aa)
MNWNSIAIAALIFGVLHLGNGPNYSFAICMNKTESHYLSSGNGM*

>peptide 4 (29 aa)
GISCSFCVSCCVSGRISSLGLLFRSIIWF*

Sequence

>CNT0000616
ATGGGATATCGTGTTCATTTTGTGTCTCATGTTGTGTCAGTGGAAGGATTTCCAGTCTTGGACTGCTCTTCAGAAGTATCATTTGGTTTTGACATGTGGC
ATTTTGAGTTGATTACAGGACTTGTAGTTTTAATATCATCATGTCGCTATTTGCTATTGAAGACGTGGCCAGATTTTGCTGAGTCTAGCGAAGCAGCGAA
GCAGCCAATCAGCAGGTCCTTAGCTCACTTCAGCCTTTGGATTATATTGTTGTTGCATTTTTGCCTGGTATTAGTGAGGAACTACTTTTCCGAGGAGCGA
TTCTTCCACTTTTGGGAATGAACTGGAATAGTATTGCGATTGCTGCCTTGATTTTTGGTGTTTTACACCTAGGCAATGGTCCAAATTATTCCTTTGCCAT
CTGTATGAACAAGACGGAAAGCCACTACCTAAGTTCGGGGAATGGGATGTGAATGATCCTGCCTCAGC