Detailed information on CNT0000618 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35266|RL171_HORVU, E-value = 3e-27

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044509, E-value = 4e-10 (A. thaliana)

Expression of CNT0000618

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0001.28900003.4652.543.0141.6461.4220.8090.327leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGSVCSASLLLCLIDLDMRNVKRINIQTFHLKRNNFQLISLEIIK*

>peptide 2 (33 aa)
MNQIPPSSQVLLFQIISTLCGTEMTYKLQKQSP*

>peptide 3 (31 aa)
MIKSLKTKNSTFDIRLILPWARYVRRLCFCA*

Sequence

>CNT0000618
TGTTGCTAACTTAGTCTCGGGCTACAAACCAAAAAAAGAATAGGAATTAGATAATGAATCATTGAAAAAAAGGGGGGGGAGAGGATCAACAAAACTAGAT
GAATCAAATACCTCCTTCTTCACAGGTTCTTCTTTTTCAGATAATATCAACTCTATGTGGCACGGAGATGACATATAAGCTGCAAAAACAGTCTCCATAA
ATAAAACCGTGTAAATGATAAAAAGCCTTAAAACAAAAAACTCAACATTTGACATACGATTGATTCTTCCATGGGCTCGGTATGTTCGGCGTCTTTGCTT
CTGTGCTTGATTGACTTGGATATGAGAAATGTAAAGCGCATCAACATCCAAACCTTTCACCTGAAAAGAAACAATTTTCAGTTAATTAGTTTGGAAATCA
TAAAATAGCCATATGGAAAAGGAAAAAAAGAGTATATAATACTTCAGCATTGCTCTCAGCATTTTTGAGCAAATCAAGGATGAATTTTGCTGACTTGACA
GGCC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G27940.1 Uncharacterized protein protein coding CNT0000618 1366 504 CDS Cis
GLYMA08G10910.1 Uncharacterized protein protein coding CNT0000618 776 446 CDS Trans
GLYMA08G10910.2 Uncharacterized protein protein coding CNT0000618 776 446 CDS Trans
GLYMA11G37160.1 Uncharacterized protein protein coding CNT0000618 251 260 CDS Trans