Detailed information on CNT0000721 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LG50|LPAT2_ARATH, E-value = 8e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007831, E-value = 5e-07 (S. tuberosum)

Expression of CNT0000721

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.3511.07500.2081.571.2291.5360000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.7

Peptides detected in this lncRNA

>peptide 1 (56 aa)
QVLGWSMWFAEYIFLERNWTKDETSLKSGFRHLEHMPLPFWLALFVEGTRFTQTKL*

>peptide 2 (41 aa)
MNSSSGPHSSHPGKASYLRCFSCSWSQLLLKSSFIRLNQRV*

>peptide 3 (28 aa)
MLVFIACFYPLFLKYRISFVKWNNVTSIP

Sequence

>CNT0000721
GCAGGTGCTAGGTTGGTCAATGTGGTTTGCTGAATATATATTTCTAGAAAGAAACTGGACAAAAGATGAAACATCCCTGAAGTCAGGTTTTAGGCATCTA
GAGCACATGCCATTGCCTTTTTGGTTGGCCCTTTTTGTTGAAGGAACTCGTTTCACGCAGACGAAGCTTTAACAAGCTCAAGAGTTTGCTGCTTCAAAAG
GGCTGCCTATACCTAGAAATGTTTTGATTCCTCGTACTAAGCTGATAGCCTTCGAGCATTCGTTCCAGCCATTTATGATTGCACATATGCAGTTCCAAAG
AGTGAGGCTTCACCTACTTTGCTGAGAATATTTAAAGGCATTTCTTGTCTGGTTGTGTCTCCTTGGGTTGCTTGTTTATGAATTCTTCCAGTGGACCTCA
CTCCTCTCATCCTGGGAAGGCATCTTATTTACGGTGCTTTTCCTGCTCCTGGTCACAGTTATTATTGAAATCCTCATTCATTCGTCTCAATCAGAGAGTT
TAAAACCCCTTATGGTTTTACCAACACAAGACCCCATGAAGCAGAAGCTTCTTCAGACATGAGCTAGGAAATAGGAATGGATTCAGCGCACGTATGTTAG
TGTTTATCGCATGTTTCTATCCTCTGTTTTTAAAATACAGGATTTCATTTGTCAAGTGGAATAATGTCACATCTATTCCC