Detailed information on CNT0000735 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P34105|MAOX_POPTR, E-value = 6e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0012184, E-value = 2e-07 (S. tuberosum)

Expression of CNT0000735

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)01.472001.1661.4651.1460.53700000.49100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.6

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHEFMTAVKQNYGEKVLVQFEDFANDDAFELLAKYGTTHLVFNDDIQLEL*

>peptide 2 (44 aa)
MTMLLSYLLNMGQLISFSMTIYSWSCSSPKTHWWYIAGVHIPLPW

Sequence

>CNT0000735
CTTGAATGTTTTCTTCTTAGGAATATTATGACCTTATGCATGAGTTTATGACTGCTGTGAAGCAAAATTACGGGGAAAAAGTCCTTGTGCAGTTTGAAGA
CTTTGCAAATGACGATGCTTTTGAGTTACTTGCTAAATATGGGACAACTCATCTCGTTTTCAATGACGATATACAGCTGGAGTTGTAGCAGCCCTAAAAC
TCATTGGTGGTACATTGCCGGAGTACACATTCCTCTTCCTTGG