Detailed information on CNT0000802 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003805, E-value = 5e-09 (V. vinifera)

Expression of CNT0000802

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.0122.9532.195001.2020.9410.58801.310.85500.2690.9180leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (78 aa)
RKFFKGFKCRSPSLVIREFETFSDLSAVIPVFRYKDIQRCVNQSRTNFYSIQLQGKERNEKPIQTNNILHPIFLSFHI*

>peptide 2 (91 aa)
VNSSKASNAVVLHWLYENLKHLATSVLSFLYSDIKIYKDVLIKAEQTFTRSNYRARRGMKNQYKQIIFSIQFFFPFIFNSDYPNFKGYIKY*

Sequence

>CNT0000802
CGTAAATTCTTCAAAGGCTTCAAATGCCGTAGTCCTTCATTGGTTATACGAGAATTTGAAACATTTAGCGACCTCAGTGCTGTCATTCCTGTATTCAGAT
ATAAAGATATACAAAGATGTGTTAATCAAAGCAGAACAAACTTTTACTCGATCCAATTACAGGGCAAGGAGAGGAATGAAAAACCAATACAAACAAATAA
TATTCTCCATCCAATTTTTCTTTCCTTTCATATTTAATTCTGATTACCCGAATTTCAAGGGGTATATAAAGTATTGAAGGCAAGAAGAAAATACCAGATA
TCAATTCCAAAGTTTTATCCGTCAAATTACAATTCTGGGACAGGTTTAGCTGTGTCAGGGAGACAATTTCTCTTATATTTTTTACACCAGCATCAGTTAA
TCCTCCGCCACATATTTCAAGGGATTGCAAGTTCTTGAACGCTG

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G23240.1 Uncharacterized protein protein coding CNT0000802 1200 444 CDS Cis
GLYMA13G23240.2 Uncharacterized protein protein coding CNT0000802 1200 444 CDS Cis
GLYMA13G23240.3 Uncharacterized protein protein coding CNT0000802 1200 444 CDS Cis
GLYMA13G23240.4 Uncharacterized protein protein coding CNT0000802 1200 444 CDS Cis
GLYMA13G23240.5 Uncharacterized protein protein coding CNT0000802 1200 444 CDS Cis
GLYMA17G11590.2 Uncharacterized protein protein coding CNT0000802 846 445 CDS Trans
GLYMA17G11590.3 Uncharacterized protein protein coding CNT0000802 846 445 CDS Trans
GLYMA17G11590.4 Uncharacterized protein protein coding CNT0000802 846 445 CDS Trans
GLYMA17G11590.5 Uncharacterized protein protein coding CNT0000802 846 445 CDS Trans
GLYMA17G11590.6 Uncharacterized protein protein coding CNT0000802 846 445 CDS Trans