Detailed information on CNT0000817 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003887, E-value = 2e-12 (V. vinifera)

Expression of CNT0000817

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNFMLFWTEGSPFFFTFTIFSLQLRFSYFQIWNHNTL*

>peptide 2 (77 aa)
MTILCPLLKAPQGCCHSCRFQSSCHLGRGRIADQRRFHFPLLCSSRTLFSFAAVFSPPLLYFHTTTMHNLFRKYTQI*

>peptide 3 (55 aa)
LYSLNCESCRNRSSLAAQNTLHELHVVLDRREPLLLHFHHLQSATAIFIFSNMES*

Sequence

>CNT0000817
ATTTATACTCTTTGAACTGTGAAAGCTGCAGAAATAGGAGTTCCCTTGCAGCCCAAAACACCCTGCATGAACTTCATGTTGTTTTGGACCGAAGGGAGCC
CCTTCTTCTTCACTTTCACCATCTTCAGTCTGCAACTGCGATTTTCATATTTTCAAATATGGAATCATAATACTTTATAATTTCCCCATCTCCTTTTTCA
TGTAGCAAATTCCATCACAAAGGGATGTTTTAACGACCATAATATTCACTTCAGAACATTTTCGAAGAGACTTGTTTTTCTTTACTTGCTCATGGACAGA
ATTAACGGGGATTGAAGGCAGGCATGTCATTGCAACTTGTTTACTACATTGGTATCATTTGTTGAATCTGCTGCTGGTGATTTTGAATATTGCAATTGAA
GCGTGAGCATGACCATACTTTGTCCTCTGTTAAAGGCACCACAGGGATGTTGTCACAGTTGCAGATTTCAATCATCATGCCATCTGGGTCGTGGAAGAAT
AGCTGATCAACGTAGGTTCCACTTTCCTCTACTCTGTTCTTCACGTACTCTATTTTCATTTGCTGCAGTCTTTTCTCCACCGCTGCTATACTTTCACACT
ACAACAATGCACAATTTGTTCCGTAAGTATACACAGATATGACTTTGCGTTTAAGTTTAAATGATTCTCTTTAGGAGGAGTGTTAGTAACACCCTATTTG
ATACAC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G23740.1 Uncharacterized protein protein coding CNT0000817 1146 409 CDS_UTR Cis
GLYMA17G12481.1 Uncharacterized protein protein coding CNT0000817 629 269 CDS_UTR Trans