Detailed information on CNT0000893 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LMX4|PPA1_ARATH, E-value = 6e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0023666, E-value = 2e-11 (A. trichopoda)

Expression of CNT0000893

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4320.8660.5902.33331.10932.44124.6650.070.11300000.16leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.535

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDSLKYIFQKIKLVTSFRNNMGNGFNIQNHT*

>peptide 2 (31 aa)
MFKFCIANTEFDWRKGSEQYKLIENCLATVD*

>peptide 3 (32 aa)
MFNIAWTFFSICTRFIYFQEYQVLPISLNTHR*

>peptide 4 (32 aa)
MFQVIKHKKPRKITQYWIHYTCCLSVCSILLI*

>peptide 5 (30 aa)
MKDIVVLAGGGEGSVLAGSALWITFWSLGY*

>peptide 6 (49 aa)
MEWTHLSIYFRKSNWLHHLETTWGMGSTYKTIPNLDNVSQTHINDLILL*

>peptide 7 (50 aa)
MLQKARLKNQWEGRTFNISNRSIRLTYQCMDMSITMKGLTLCIRLNIGLS*

>peptide 8 (32 aa)
MLRSCNWFDWDQNMSSEIHKLSLKLSEKVLTS*

Sequence

>CNT0000893
AGAAAAAATATGACATACTAACTAAAAAAATTAATTAATCATATTTAATTACACTAATTTTAATTAAAAAGTAATCATTTTAACTTATTTTTCATTAAAA
TTTGGTATCAAGATAAGAAAGAATCATTGAAACTGACATGTCAATAAAATGAAGGATATTGTAGTCCTCGCTGGTGGTGGTGAAGGGAGTGTCCTCGCTG
GTAGTGCTCTTTGGATCACCTTCTGGAGTTTGGGTTATTAGGAAATTAGTCTTGACATTTCTCCTCGCTGGTAGTGTTCTTTGGATCACCTTCTGTAGCA
TCTTTCACATTTATTCAAAACATCAAAGTTGCATAGCCATGCACTTTGTCTTGCATCAAATAAAACTAAATTAGCTTATTTAGAAATGTAGTAAATTTTG
TTAACTTCTTGAATATACCTACCAACCAAATGTTAATTATGTTGTTTTCTCCTAAAAGATCTTCAAAATTTACTTTACTTTGCCAGATACTCAGTTGACT
ATGGTATGTTCAAATTTTGCATAGCTAACACAGAATTCGATTGGAGAAAAGGATCAGAACAATATAAATTAATTGAAAATTGCCTAGCAACGGTTGACTG
ACAAATCTTACAAGCCATGGCTGATATTTCTTGCACATAAGGTACTTGGTTATTCTTCTACAAGGTTCTATGCTACAGAAGGCTCGTTTGAAGAACCAAT
GGGAAGGGAGGACCTTCAATATCTCTAACAGAAGTATAAGGTTGACATACCAATGTATGGACATGTCCATAACTATGAAAGGACTTACCCTGTGTATCAG
GTTGAATATAGGGTTGTCATAGTTTGATGCAATTCTTATTGTTCCAATGTTTAATATAGCATGGACTTTCTTCTCAATCTGTACAAGATTTATATATTTT
CAAGAATACCAGGTACTCCCTATTTCACTTAATACACACAGGTAGCCTTTGCCTTTTATGGGCACTCTAAGAAGATTTAATCATATTATTGAAAAAAATC
ATTAAATATCAACTACTTTGATGGAATGGACTCACTTAAGTATATATTTCAGAAAATCAAATTGGTTACATCATTTAGAAACAACATGGGGAATGGGTTC
AACATACAAAACCATACCTAACCTAGATAATGTAAGTCAAACTCATATAAATGACTTAATCTTGCTTTAGATATAGAATTCCATTATCAATATTATGTTG
CGTTCATGCAATTGGTTTGATTGGGATCAAAACATGAGTTCTGAAATTCATAAGTTGAGTCTCAAATTGTCGGAGAAAGTGCTCACCAGTTAGAGGATGT
TGAACAATTAATCATTTATGTAGGGAGGTTCTGAAATTGAACAATTAATCAACTTGTTTTAATAATACATATTTGTTTCTAGTTGTCTAGATTATGTTGA
TTGATTTGTGAAATGATATCAATGGAAATTTTAAATTTCAATTTTATGGTTATAATATGTTTCAAGTCATCAAACATAAAAAGCCAAGGAAAATAACTCA
GTATTGGATCCACTATACATGTTGTTTGTCAGTATGCTCCATATTATTAATTTAATATTCTATAGTCTTGTATTATTGATGTAATTTTCACTTTGTTGCT
TGTATAACACTAGACATACTCACCAAAGCCAACTTGATGATATTTTGCTATGTTTGCTTCTTGTGTTAACATTTAAACTACATGGATAGATGATTCTCCT
TGTCAAAGTAAATTGACTTTGTTCACAATGTGATGGTAGTTTACAAACTAAACTGATATAAATTCATATTATGTAAATTTATCTTTTTAGTTTGTATTTT
TATCGCCTAGTCATTTATCAGAACTTGGGAAATGATCTACGTGTTGTCTTTAGTCTTCTATGCATTTTTGACATTGGAAACAATAATCCATGCAGCTACA
CAGTTTAATTAGCAAAAAAAAAATATAATTATATTGATTTTTACAGGAAAACCATCTTAACCTACAGTCTTCTAAAAAGATTTTCTCGTCAAAACCATTT
TAGAAAACTTTTTCTTTTAAGACAATTTTGGCAAAAAAACGTCTTCAAAATAAGATATCTATAAC