Detailed information on CNT0000963 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016531, E-value = 3e-54 (S. tuberosum)

Expression of CNT0000963

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MFQFTGLSLACPWIQHQFERLTYIGNLRIYASGVSNLIRSPSFRLSVSVSAQQSAFAVGVLSNLYAFHRSTRNSLTEKTCWACDISSTDRVAKEMRRG*

>peptide 2 (33 aa)
IGLNHMLHAVRAPVNSFEFHSCKHTPQAGYLTR*

Sequence

>CNT0000963
ATTGGATTAAACCACATGCTCCACGCTGTGCGGGCGCCCGTCAATTCCTTTGAGTTTCATTCTTGCAAACATACTCCCCAGGCGGGATACTTAACGCGTT
AGCTACAACATTGCACGGGTCGATACGCACAGTGCCTAGTATCCATCGTTTACGGCTAGGACCCGTTTTCACGGTTTAGGCTACTCCCATTTCGCTCGCC
ACTACTACGGGAATTGCTTTTGCTTTCTTTTCCTCTGCTACTAAGATGTTTCAGTTCACCGGGTTGTCTCTTGCCTGCCCGTGGATTCAGCACCAGTTCG
AAAGGTTGACCTATATCGGGAATCTCCGGATCTACGCTTCTGGGGTATCTAATCTCATTCGCTCCCCTAGCTTTCGTCTCTCGGTGTCAGTGTCGGCCCA
GCAAAGTGCTTTCGCCGTTGGTGTTCTTTCCAATCTCTACGCATTTCACCGTTCCACCAGAAATTCCCTCACTGAAAAGACTTGTTGGGCATGTGACATC
TCAAGCACCGATCGTGTAGCAAAAGAAATGAGGCGTGGATAA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G16286.1 Uncharacterized protein protein coding CNT0000963 403 177 CDS Trans