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Detailed information on CNT0016531


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004708, E-value = 2e-22 (V. vinifera)
CNT0000963, E-value = 5e-54 (G. max)
CNT0028376, E-value = 1e-51 (O. sativa)

Expression of CNT0016531

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLIPQIPSLLLLRKKRFTTRGPSTSTRHCSIRLSPIAENSLLLPPVGVWAMSQSQCG*

>peptide 2 (44 aa)
MQASCSLQSKLRTVFGPCTTCVRVPEGTPLFQEDSRHVKPWRDT*

>peptide 3 (245 aa)
MASSHSVTGGVYKARERIHRQMANRRLLAIPASCRRVAACNPNLGRFLGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLG
LLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQSYR
CLFPRYHHCFFSGKRGSRPVGLLPPRDIAPSGFRPLRKIPCCCLP*

>peptide 4 (30 aa)
MHHLCPRSRRHPSLSRGFAACQALAGYLTR*

Sequence

>CNT0016531
ATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCAAATGGCTAACCGACGATTACTAGCGATTCCAGCTTCAT
GCAGGCGAGTTGCAGCCTGCAATCCAAACTTAGGACGGTTTTTGGGCCATGCACCACCTGTGTCCGCGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGAT
TCGCGGCATGTCAAGCCCTGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGA
CTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCT
CTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGAC
GGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTACCGA
TGCTTATTCCCCAGATACCATCATTGCTTCTTCTCAGGAAAAAGAGGTTCACGACCCGTGGGCCTTCTACCTCCACGCGACATTGCTCCATCAGGCTTTC
GCCCATTGCGGAAAATTCCCTGTTGCTGCCTCCCGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATAATCGCCTTGCCGTTTCCAGCTGTTG
TTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACTGTTTCCCGTGTTTCCCGTTCGACTTGCATGTTTTAAGCATGC
CGCCAATGTTTATCCTGAGCCAGGATCGAACTCTCCATAA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400022652 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic protein coding CNT0016531 803 315 CDS Trans
PGSC0003DMT400074585 Conserved gene of unknown function protein coding CNT0016531 1014 329 CDS Trans
PGSC0003DMT400074585 Conserved gene of unknown function protein coding CNT0016531 163 56 CDS Trans
PGSC0003DMT400088068 Gene of unknown function protein coding CNT0016531 190 59 CDS Trans