Detailed information on CNT0000974 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q1ECF1|PYL7_ARATH, E-value = 1e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043959, E-value = 1e-07 (A. thaliana)

Expression of CNT0000974

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIYLGKSRDNCKKLKNKVIITQIKLRNQGCKTLQIID*

>peptide 2 (66 aa)
MVTSNNPDAENVFLIIQLFQPLSTCCGRKARFNIHFSNTSDAKIPLHDTPANKWFIFLRLIKSSHQ*

>peptide 3 (50 aa)
MPRMCSSSSSCSNLSVLVVAGRPDLTFTSRTLPMPRSPCMIHLLTNGLYF*

>peptide 4 (80 aa)
MKTEETVFGPTKIFTNNYSNTPPSTKSRKNIAGKNFPLTSLCFHEALNLILQILKKRHLAVQKSDYTAKNARRMVGGMYP*

Sequence

>CNT0000974
CTGAAATTCCACACAGCAAGGTGCATGACACCAACCGAGAGCCAGAAACAAAATCATTTTGATTAAGTGTTCTGAACATAGTCCTAAACAAGGAGAATAT
GGAATAGATAACTTCTTACAAAAGCTACACTACTTATTAAAGAAAATAACAAGGCAGTATCCACTATTTGGAGTTTCCTTGTGCCAGCACATAAATCTGG
CAAAAAGTTGCTACTAAACATGAAACATGAAAACTGAAGAAACTGTCTTTGGTCCAACAAAAATATTTACAAATAACTATAGTAACACACCACCATCCAC
AAAATCCAGGAAGAATATAGCAGGTAAAAACTTCCCCCTCACATCCTTGTGCTTTCATGAGGCACTGAATCTCATCTTACAAATATTGAAGAAGAGACAC
TTAGCAGTTCAAAAGAGTGATTACACAGCTAAAAATGCAAGAAGGATGGTAGGGGGAATGTATCCATGATACAGATGAAAAAAGTTCCAAAACTTCTGGG
AACATAGAAGGAATACTCCAACCAATGTCCACACTTGAGCTAGGATCAGAGAGCAATGGATCATATAATTTGTATGAACCCAACTTCATTCTCCCCTAGA
CATGCTTAATGGTTGATAGGATTGGTTCGACCTTGCACGGCCATCCTCTCTGAGACATCAGCTAAAGAGCTTAGGTTACACCTGATCAAAGCCTCCACAA
AGTAACAAGTTTCATCCCTGGTGTTCCCATCAGGCACATCCACCACAAATGATTCGATCACCATTGTACCGGGTCTCCCATCGATGACCTCTGGATGGAC
GGTGATTATGGAAGAATAGTTCTGCAAATTCCACAACATGATTGAGTATTAAACCTGGTGATAGAGCTAGCAAAAATACATCTCTTAGTGACAACATAAC
AACATAGGAAATGAATCAACAAACTTAATTAAAATCAGCATTTGATCTTGGTAATCCTTGTTTTCATCTCAATGATTAAAATCAGCCACACTAACCACAA
TCAAATGTTGATTTTAATTAAAGAACACTAGCAACGGTACTTATGGTACTGTATCTATGTTTTATCCATAAATTTGCAAGATTTGATAAATAAATAAATA
ATCCTCCAATTAATGATATATTTGGGAAAATCAAGAGACAATTGTAAGAAGTTGAAAAATAAGGTAATCATTACGCAAATTAAACTGAGAAACCAAGGTT
GCAAGACATTACAAATTATAGACTAAACAGAGTAAATACCAACAACAAAGAGTAGACTGCAATGCACAATCCTTTCAAACTACTACTATTTTCTAAATAA
AATACATGATGGGGAGAGCTGATCAAAGACTTTTTTAATAGAAAAGTCAAATATTTTTTAATAGAAAAGTCAAATGTAATTATAAAAAAAAGAAGTAAAA
TCCCCAAAAATTATACCAATTTAATAACATATGCAGGCAAGTGATACTTTGATCCATCTCCAACATTTCTAACAAATTTCAGATTATTGTTTGTAACAAA
TTTCTAACATATGCAGTACTCCTACATTCTTCTGGAAAACAAACTTTAACAAGAAAACAAAAGAGGAAGTATCCTTGTCAAAGTTCTAAAACACAACCTA
AACAATATCTTCAAACGTGCTTCGTTTCCTATCACCCCAAATTTAACCATTAATATTTAGCTCTCATGATAGGCTTTCCAAAAGGCAGTAGTATTATTAG
ATTACAATTTGTTTTCCGTTTGTACAGATAAGAATGCTTTCAGTTAATAACTCAACACTCACATTTTATATATACAAATACAATATTGTGACCTCGTAGA
AAAGAGCAATATTTGGTTTTCAAAATCTAATTATAGAAAAATAAAACCGAATAAGGAACAACAAAGTATCATACCCTCAGCCTATGGTCACCTCCAACAA
TCCTGATGCCGAGAATGTGTTCCTCATCATCCAGTTGTTCCAACCTCTCAGTACTTGTTGTGGCAGGAAGGCCAGATTTAACATTCACTTCTCGAACACT
TCCGATGCCAAGATCCCCTTGCATGATACACCTGCTAACAAATGGTTTATATTTCTGAGGTTGATCAAATCTTCTCACCAGTGACCACACCTGA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G06270.3 Uncharacterized protein protein coding CNT0000974 1284 470 CDS Cis
GLYMA07G06270.3 Uncharacterized protein protein coding CNT0000974 2928 1062 CDS_UTR Cis
GLYMA16G02910.1 Uncharacterized protein protein coding CNT0000974 724 461 CDS Trans
GLYMA16G02910.1 Uncharacterized protein protein coding CNT0000974 1835 912 CDS_UTR Trans