Detailed information on CNT0001084 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P49076|ARF_MAIZE, E-value = 5e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044865, E-value = 1e-17 (A. thaliana)

Expression of CNT0001084

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5551.3361.13701.0580.4981.042.07300.10900000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.2

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGLTFTKLFSRLFAKKEMRILMVGLDVAGKTTILYKLKLAEIVTIIPTIDNV*

>peptide 2 (55 aa)
MRSHRRKPIEEALCSVSYSMKNFCNSKILCFFSPFRAFFSFVFRLFQNPQIMLLL*

>peptide 3 (98 aa)
MFCFLQYEKFLQFKNFMFLLSISRFLFLCVSAVSKSTNYASPLASSACHFTRQTYEAFKKFHLSSRPLPLPLMMSFSNLNLNGLIMRVWNRVVPPALF*

>peptide 4 (33 aa)
HTCFISRFLPFFYFKIHVFFFFSHYLHILVLHL*

>peptide 5 (46 aa)
YMFHLALSSFFLFQNPCFLLLLALPTHTSSTPLSYQIYEITSPKAH*

>peptide 6 (55 aa)
MSEIQNPIHMEFGRNLRGKNGLICESVLMELKEFVSMCGGPNEKLRADRLINCLR*

Sequence

>CNT0001084
CATACATGTTTCATCTCGCGCTTTCTTCCTTTTTTTTATTTCAAAATCCATGTTTTCTTCTTCTTCTCGCACTACCTACACATACTAGTTCTACACCTTT
GAGCTACCAAATTTATGAGATCACATCGCCGAAAGCCCATTGAAGAAGCACTATGTTCTGTTTCTTACAGTATGAAAAATTTTTGCAATTCAAAAATTTT
ATGTTTCTTCTCTCCATTTCGCGCTTTCTTTTCCTTTGTGTTTCGGCTGTTTCAAAATCCACAAATTATGCTTCTCCTCTAGCTAGCTCAGCTTGTCATT
TCACACGCCAAACCTATGAGGCTTTTAAAAAATTTCATCTTTCTTCCAGGCCTCTTCCTCTTCCTCTTATGATGAGCTTTTCAAATTTGAATTTAAATGG
CCTCATAATGAGGGTTTGGAATCGAGTTGTACCGCCCGCTTTGTTTTGAGCTCCGTTGTCATTGACTTCTTGCCGCTCCACCTCTCACCGCTCTGATCCC
GCCGCCACAAATCCTTCCTCATTTCCTGTGATTCCTCCTGCCACAAATCTACCTCTGGTGACTCTCACAGAGCCAACAACAACAACAACGATTATCTCGA
AGCTTCTCTCCTTCTCTCAAGCCTCATTTGCACAAGGATCCACTAGTTGAAGGAGAAATGGGGCTGACATTCACAAAGCTTTTCAGCCGACTTTTCGCGA
AGAAGGAAATGCGAATTTTGATGGTTGGTCTTGATGTTGCTGGTAAGACCACTATCCTCTACAAGCTCAAGCTTGCAGAGATCGTTACTATAATTCCTAC
CATTGATAATGTCTGAAATTCAAAACCCAATCCATATGGAATTTGGTAGGAACCTTCGAGGGAAGAATGGCCTAATTTGTGAGAGTGTTCTTATGGAATT
GAAGGAGTTCGTATCAATGTGTGGAGGGCCCAATGAGAAACTGAGAGCTGACAGGTTGATAAATTGCCTCAGGTGAGTTTAATCTATGTTTGTTTGTTTG
TCTGCAAAAAGAAAGAAAATTATTTTGTTGTTGCTAGGTTGTTAACTATGCTAAATAAATGTATCCAGGCC