Detailed information on CNT0001102 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007471, E-value = 1e-16 (V. vinifera)

Expression of CNT0001102

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.7931.863.974000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHVHMLKAYDDFMKHEYNTYGYVLQCGRS*

>peptide 2 (58 aa)
MGDSSSSSCPASYIHMVQHLIEKCLIFHMTKEECMEALSKHANINPIITSTEACTCIC*

>peptide 3 (58 aa)
MHAYYHIYVCMGLKPHVFCGCDLVWLYPTTGIYIVSFKIFTCMAAYFVKIRDVDIQRL*

>peptide 4 (31 aa)
MKSKAKDDRMSQEETNQIIQKMISESDSSKR*

Sequence

>CNT0001102
GCTAGCTAGTTAGTTATGGGAGACTCTTCTTCATCTTCTTGTCCTGCTTCATACATTCATATGGTGCAGCATCTGATCGAGAAGTGTTTGATCTTTCACA
TGACCAAGGAAGAATGCATGGAAGCTCTCTCTAAACATGCAAATATTAATCCTATTATAACATCCACCGAAGCATGCACGTGCATATGTTGAAAGCATAC
GATGATTTTATGAAACATGAATATAATACGTATGGATACGTGCTTCAGTGTGGAAGGAGCTAGAGAAGGAAAACAAGGAATTCTTTGAGGCTTACATGAA
GTCGAAGGCTAAAGACGACAGAATGTCTCAGGAAGAGACAAATCAGATAATACAGAAGATGATCTCAGAGTCAGATTCCTCTAAAAGATGACTAAACAGC
TATATAGCAAATAACACAATGCCATGTCAGCTATGTAATTTTATCTCAGATAGTATATAATTAGTATCAGTATGCATGCATATTATCACATATATGTGTG
TATGGGATTAAAACCACACGTCTTTTGTGGTTGTGACTTAGTTTGGTTGTACCCAACAACAGGAATATATATTGTCTCATTTAAAATATTTACATGCATG
GCTGCATATTTTGTGAAAATAAGAGACGTAGATATACAAAGACTATAGTTTTGTAATTTCATGATTGTTTTTTTCTAAAGGACACCTATTTCATATGGTT
TGTAC