Detailed information on CNT0001141 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q53YF3|SPC3B_ARATH, E-value = 2e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006427, E-value = 3e-12 (V. vinifera)

Expression of CNT0001141

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.7851.051.2882.8621.6230.6270.9820.5754.1034.5114.6854.1424.5246.4644.936leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTMNISANLQSLFTWNTKQVFVFLAAEYETPKKPLNQV*

>peptide 2 (68 aa)
MLQISLCLSFPFFFFFRVYGSNLRGKEFNLTMHWHVMPKTGKMFADKIVMPGYRLPEEYRRSLHLLMY*

>peptide 3 (31 aa)
MKNFSVLLCSLALDRTFSLFFLRNVSDIIFL*

Sequence

>CNT0001141
GTGTGGGAGGGAGAGAGTACTAGAGTTGCTTCTGCTTCTGGATAGTAGCAGCCAGAGAGAGCTAATGCTTTGTTAACCTTCGCCATAACCCTTCTGGCCG
CCATGGCTTCTCTCTCCGACAACCTCAATTCCCCCACTCCCTTTCTGCATGTTCAGATCTGTAATCCTCTCATTCCTTAACCTAACATCATTTCATCTTG
TCTCTGTATTGGTTTCATAAACACCCCAACGGCGACGACGAGGTCAGCATGACAATGAATATATCAGCAAATTTGCAGTCTCTTTTCACATGGAACACAA
AACAGGTTTTTGTATTTTTAGCTGCTGAGTATGAAACCCCTAAGAAACCCTTGAATCAGGTTTGATTTGATCTGTTTGTTTGCATCTTAGCTTTGATATT
TAAATAATTTGAGGTCCATTTCAAAAGGGGGAGAACAAAAGGAAGCCATGGTCCTTTGCGCTTCATTATTGCATGTTGTGTTGCATCTTTCTCCTACATT
TCAAGCTTTGCTATATGGTATCTCGTAGCTGTTGCTTATGCTTTTAGGATGCCAATTTATAGATATCGCTGTGGGATGGTATAATTCCTTCAAAAGATCA
TGCTAAGTTTTGGATTCATACATCCAATAAGTACCGCTTCATTGATCAGGTACAAAACTCTTCAAGGATGCAATTGCTAGCATAAATGCTTCAGATTTCT
TTATGCCTTAGTTTTCCCTTCTTTTTTTTTTTCCGTGTCTATGGAAGCAATTTGCGCGGTAAAGAATTTAATTTGACAATGCACTGGCATGTTATGCCCA
AGACTGGCAAAATGTTCGCTGACAAAATAGTCATGCCAGGGTATCGATTGCCCGAGGAATACAGACGAAGCTTGCATTTGTTAATGTATTGATATTGATG
TAACTTTAACCTTTTCTATGATTAGTTGGAGTATTATGTTGGGAAAAGGTTAGCCAAAAAATTGCAATTTGGGAAAAGTTTGGCAAAAGTTAAAATGAAA
ATAGTTGGAGTATTATGAAAAATTTCAGCGTGTTATTGTGTTCTCTTGCGTTGGACCGAACATTTTCTTTATTTTTTTTAAGGAATGTTAGTGATATTAT
CTTTCTATGATTAGTTGGAATTAATTGGAAACCAC