Detailed information on CNT0001291 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZT05|PSAK_MEDSA, E-value = 1e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003275, E-value = 2e-10 (V. vinifera)

Expression of CNT0001291

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNFSTIMHMHTQQFTRLLHAQTRFSYVPLQKN*

>peptide 2 (39 aa)
SPAVAFLFADGANPNLPANSIRVVEATIICPNMSTIRYT*

>peptide 3 (44 aa)
MVALQIKQFTTVTTAFESFTSFFFTGIKDRYMRFTPTHTSCSTN*

Sequence

>CNT0001291
AGCCCTGCAGTGGCTTTCCTGTTTGCTGATGGAGCCAATCCAAACCTTCCAGCAAACAGCATCAGGGTTGTAGAAGCCACCATAATCTGCCCCAACATGT
CAACAATCAGATACACATAATCATGGTAGCATTGCAAATCAAGCAATTCACAACTGTAACAACTGCTTTTGAAAGTTTTACTTCTTTTTTTTTCACAGGA
ATCAAAGACAGATACATGAGGTTTACACCAACTCACACATCATGCTCAACCAATTGAGATAGATCTCCTTTTTTTGAAAGTTTTACTTTGTTCAATCCAT
AGATAATGGTAAATGGTACAAGTACACATAGAAAGGGGGTTTGTTTAGATAAAAATCTCTATTAAGCACTTTTGGGAGAAAAAAAATTGGAAAGAAAATT
GAAATAATTTAAAGAAGCTATGCAGTTCGTCATTTTTACATTATTATTACAAGATTTCCTTTTAAAAGGAATCTAGTATGTGATACAAGTGAATTCGGTA
CTCAGTATAAGGTTATTGATAAAATTTCATAACTACGATTCAATCAACTATATAACAAACTTTCAGGAATTCCAATTAACATTCATACATAATTCTCAAT
CACTTCTTTCTCATGGTAACTGAACTAGAAACTACATGAATTTTAGTACTATTATGCATATGCACACTCAGCAATTCACAAGATTGTTGCATGCACAAAC
AAGATTTTCTTATGTACCCCTCCAAAAGAATTGAATCTACTATCTATTATGCTTTGTAAATAAAGTCAGATGAAACTACAAAAGTAACAAGGAAACAATG
AAATGACTCAAACTATTAAGATCCTACCAGATTAGTGGATGAACCAATGTAGTCACATCGAGCTCCCAAAGCACCCTTCCCCTTGGGCCTCATAGGTTGT
TGGACAGCAA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G11460.1 Uncharacterized protein protein coding CNT0001291 930 336 CDS Cis
GLYMA09G11460.1 Uncharacterized protein protein coding CNT0001291 904 333 CDS Cis
GLYMA15G22780.2 Uncharacterized protein protein coding CNT0001291 518 334 CDS Trans