Detailed information on CNT0001897 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LEF6|AB11I_ARATH, E-value = 4e-63

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0008536, E-value = 4e-12 (S. tuberosum)

Expression of CNT0001897

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.0466.4217.3443.6566.8332.8614.594.09411.4649.16810.388.0039.0235.8974.504leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213

Peptides detected in this lncRNA

>peptide 1 (137 aa)
MTTVLRPPIGLRFLQPPQLSPSPTSCVSFSLSLKLPRINSNYSSFEVRDVTYQPPGTQLRLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTS
GSIYIQEYESDGNPSQPPEPLVPERVGIVFQFPERLD*

>peptide 2 (36 aa)
MRVMEIPVNLQSPWCRKGLVLSSSFPRGWIKWDIIE*

>peptide 3 (36 aa)
MSMLQEIIAVLESSTSCLESDGCHIFPGENCSKVQA*

Sequence

>CNT0001897
GAGAAATTAAAAAGAGAGATATGTTTTACCCTTAGCCGGTCGTTAAAATTTCTGTAGTTCGAAGCAAATATTCCATCGTCCCATCCTGCCGGTTTGCCGT
AGCTGGAACCCGGAAAACACACCCGGAGCCACCGTGAATGACGACCGTTTTGAGGCCACCGATTGGGTTGCGCTTCCTCCAACCACCACAGCTTTCCCCT
TCTCCCACATCGTGTGTTTCTTTCTCCCTCTCACTCAAGCTTCCCAGAATCAACTCTAATTACTCCTCTTTCGAAGTTAGAGACGTTACCTATCAACCCC
CGGGGACTCAGCTTAGACTTCTGAATTCAGTTAGTTTTTCACTTCCAGAGAAGAGTTTTGGTTTAATTTTCGGGCAGAGTGGAAGCGGAAAAACAACTCT
GTTGCAGCTTCTTGCAGGAATAAGCAAACCAACCTCTGGATCTATTTACATTCAAGAATATGAGAGTGATGGAAATCCCAGTCAACCTCCAGAGCCCTTG
GTGCCGGAAAGGGTTGGTATTGTCTTCCAGTTTCCCGAGAGGTTGGATTAAGTGGGATATCATTGAATAAAAATCCTCACTCCCTCAGTGGTGGTTACAA
GCGTCGTCTTGCCTTAGCAATACAATTAGTGCAAACCCCTGATCTATTGATATTGGATGAACCTCTTGCAGGACTTGATTGGAAAGCACGTGCAGATGTT
GTGAAGCTTCTGAAGCATCTAAAAAAGGAATTAACTGTGTTAGTTGTCAGCCATGATTTGAGAGAGTTCGCAAGTCTTGTTGATCGATCATGGAGAATGG
AAATGGGTGGCAACCTTAGAGAGGAATTTCTACCATTATGATTTATGTTCATTGCCTTGTTAATCAGCATGAGATGCCATGAGCATGTTGCAGGAGATAA
TTGCTGTTCTTGAAAGTTCAACCTCATGCCTAGAAAGCGATGGGTGTCATATTTTCCCAGGGGAAAACTGTAGTAAAGTTCAGGCCTGAATACTATTAAG
CAATGTTCATTTATAAGATATACACGAATGTGCTGCAGTAACTTTGAGGACTTTTCTATGCATAGGGACAAATAATTGTTGCGGCTCATTCAAAGCTAAA
CATGCTTAAGCTATTGTTTCTCCATTAATGGTAATTTGTAATTGAATTAGCTCAATATATTGAACATACTTAATTAGAACACCTTTAGTTCATGATGGAC
CTTTCTTTCTAGTCAATTTTTGAGGCATCAACTAATAATTTTCG