Detailed information on CNT0001940 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003759, E-value = 4e-06 (V. vinifera)
CNT0028701, E-value = 7e-08 (O. sativa)
CNT0035597, E-value = 1e-06 (C. reinhardtii)

Expression of CNT0001940

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00001.5380.9091.4230.5840.2790.4460.4040.2650.83900leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.7

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPQLPLLLKFRLPPFSSIGKRFVGPSKVTEDMDTDR*

>peptide 2 (60 aa)
MVHGSFITFFQFHKYFGLPSFNLLIQFIYKIHHLIPSPFHLMLMFHVLLSLNHITSKITL*

>peptide 3 (79 aa)
MTESKEATLLEAEKISCRKSEVDFKFLCFLLVSQVKNWEVTHSCFWDLLFFIIIIIIIIKSCFRKLDDLMVQLLQQLRL*

>peptide 4 (37 aa)
FTRKLRELVPEQAKSHTSITCHSFLYCSNSGCHRFPP*

Sequence

>CNT0001940
GTTTACGCGTAAGTTGAGGGAGCTGGTGCCGGAGCAAGCAAAAAGCCATACCTCAATTACATGCCACAGCTTCCTTTATTGCTCAAATTCAGGCTGCCAC
CGTTTTCCTCCATAGGAAAGAGATTCGTGGGACCATCGAAGGTTACAGAGGATATGGATACTGATCGTTAAATTCATTAACCACTGGCATGAGATCAAAG
CAGCACCTCTAGCAAGGAAGAATAGTTGGCAACTAACCATCATTAACCTTGGACTGAGCAGCTTCCATTCTCACTTGTTAAAGGCCCGAGATGGTTTTCC
CTTTGCTGGTCTTATTGATTTACAAGGTGCTTTGATAAAGAGGTGTTTGGGTCTAAAAACTCTTAATCAAAGAAGAAAATGTTTCACCAAAAGAAAATCA
AGGGTATGTAATCATTTTGTGTTGGTGCCTAATCAATCTTGATATGAAATAAAAGGGTACAAAATTGGAAATCGGTTGCTTCTCATGAGACTGAATAGTT
ATTCTTGAAGGTTGATGCTACTATCTTCTAAAAGTTGATGGTGCTTGCATAGAACAAAAACAAGGAAAGAGTTATTGCTGTCAACACTCATGGTCAACAT
GTTCTCTATTAGGCTGAAGTGTATCAGCACTAGAGCTTTTGTTTGCATTTTCTTGGACAAGGGACTCCAATAGGTGCTACTGGGCACCGTGCGCCACTAC
TTTGCTGAGTTGCCTCTCTCTGACATTGACACTCGCACTTATACATCTTTGGGGCTCTGTATGAGGAGTTAACTAGAAAAGTTGTCACTTTGGTGGCAGA
GAATGAAAACCTAAAGAGGGAGAAAGAATTGGCTTTGAAAGAGTATGAGTCTTTGGAGACTACAAATAAGAACTTGAAGACACAGATAGCCAAGTCAATA
AACACTGAAGTGGAGAAAACTCCTGTTGAGCCTGTGTCATCTGTGGCTGAGATAACACCTTCATCCGGTAATGGTCCATGGTTCCTTTATAACCTTTTTC
CAGTTCCACAAATATTTTGGCCTTCCATCCTTCAATCTTCTAATCCAATTCATCTACAAAATACATCATTTAATTCCATCGCCATTCCACCTAATGCTAA
TGTTTCATGTTCTTCTGAGTCTGAATCACATCACAAGCAAAATAACCTTATAAATGATAATCGAACTCGAGTAATCACTTTTTAAAATTTTATTTTGATC
TATCCTTTTGATTTTTGAGGTTGTAAGTTTCTTTCTTTAGCTTAATCACTAGAAGAAGATAAGAAAGCTTTTGAAATGACTGAGTCAAAAGAGGCAACAT
TGCTTGAAGCAGAGAAGATTTCCTGTCGTAAATCTGAAGTGGATTTCAAGTTCCTGTGTTTTTTGCTGGTTTCTCAAGTCAAGAATTGGGAAGTAACACA
TTCCTGTTTTTGGGATTTATTGTTCTTTATTATTATTATTATTATTATTATTAAGTCATGTTTTAGGAAATTGGACGATCTGATGGTGCAACTTCTCCAG
CAGTTGAGGCTTTAACCTTCTCTCATACTTACTGTTTGCTGCTAGCTTTAATTCAATTTAGTTGTC