Detailed information on CNT0002066 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9USZ5|TRS20_SCHPO, E-value = 7e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021733, E-value = 7e-17 (A. trichopoda)

Expression of CNT0002066

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.0435.4075.7819.9515.242.1112.5271.82315.4369.50112.89811.57911.91612.239.199leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718192021

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VLIQDRFGTNSLKHLGHLGLRTEPVKVVQFGSGFE*

>peptide 2 (38 aa)
MYLKSVDRFNELVVSVYVTAGHILYTWDYFIVEIKRIA*

>peptide 3 (55 aa)
MLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL*

Sequence

>CNT0002066
GTTTTAATTCAGGACCGGTTTGGAACCAATTCTCTAAAACACTTGGGACATTTGGGTTTAAGAACCGAACCTGTTAAAGTGGTTCAGTTTGGTTCGGGTT
TTGAATGAACTGATTTTTGCACACCCTAGTTTTAGGCTTTTAGCCCAGGCCACTCAATAAGGGGCTTAACAAAAACCCAAAAAACATGCATTTGTTCCTG
AATTTCTTGACGAATCCTAATTCCTAACTAATTCTACTCAACAGTACATTCAATCCACCGCTTTGTTCAACTCAAATCCTCAATCGCTCGCGATTTCTTC
TTCTGGAATTCTCAAGGATCTCGATAAATGGCAACCACTGCCTGTTTCATCATTGTTAGCAGAAATGACATTCCTATATATGAAGCTGAAGTTGGAGTAG
CTGCTAAACACTAAGCAAGGGATTATTGTATTCTTCACCAAATTTACATCATTTTGCAATTCCATGCTACCTTGAGACAGAGGGAGGATTCTGCTCAGCT
GCATCAATTTATCCTTCATGCTGCTCTCGATATTGTTCAGGACCTTGCATGGACTACTAGCGCTATGTACTTGAAATCAGTAGACAGGTTTAATGAACTT
GTGGTGTCAGTGTATGTTACAGCTGGTCATATCCTTTATACATGGGATTATTTTATAGTTGAGATAAAAAGAATTGCATAGCTCTTGTTTGTTCACTTTT
TTTTAATCTTGTTTTTCCAAATAAATGAAGTACCGATACCCAACTTTAAGGACCAATCAATTTAGTTAGCTTCATTAATTGTATAATTATGCCATTGTCA
CTGGCAGGGTAACAAAATAAAAGCACTTGGAGTGGAGAAGTCTTAAACTTAAAGCTTACAGCAAACACATATCTCTTTATGCCTTTTTTTTTGTGTGTGA
TATTTTCCTTGACTTGTCATACATACCCGATTTATGTTGCTACATGACTCCCGTAATGATGATGGTATCAAGAGCTTCTTCCAAGAGGTGCATGAGCTTT
ACATAAAGACTCTCCTTAATCCCCTGTACTTACCTGGCTCCCGGATCACGTCATCACATTTTGATACTAAAGTCCGAGCCCTTGCACGAAAGTATTTGTA
GAAACCACTAATTTGTCTGTGGTTGATAGTTCATATAGCACTGTGGCCCGACTCTTAACCTTGTTCGTTCTTGATTACATTTGAAAAGCTGTATTTCTTT
TTCTTTATTTCCATGATTTGGCGGCAAGAGTAGATTTGCTGCTGTCTATAATGTACCTCAGTCATTAGCAGGTGGTGCCTGTTTTTGCTAATGAAGGCGA
TTGTTGACGAGCTATTTAATTGCTAGTGGCTTCATTTGTGATACATATTAATCTTGTACTTAATGCTCAACTATTTGATCTTGTACTTTTCTTTCAATAT
TTACTATAAAAGATAGTAGGAGGATTTGTAGGA